Amycolatopsis sp. YIM 10: YIM_38540
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Entry
YIM_38540 CDS
T06270
Symbol
recQ2
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YIM_38540 (recQ2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyy03019
]
YIM_38540 (recQ2)
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_38540 (recQ2)
Enzymes [BR:
amyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YIM_38540 (recQ2)
Messenger RNA biogenesis [BR:
amyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YIM_38540 (recQ2)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
YIM_38540 (recQ2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
AAA_22
DUF8096
SWI2_SNF2
PglZ_C
Motif
Other DBs
NCBI-ProteinID:
QFU92864
LinkDB
All DBs
Position
8099847..8101973
Genome browser
AA seq
708 aa
AA seq
DB search
MHTDPEDTPALRRRSDELLRALAGDTAVLREDQWTAIEALVAHRRRALVVQRTGWGKSAV
YFLATALLRERGAGPTVIISPLLALMRNQISAAARAGIHAATMNSANQQDWDEVQADIAA
GRTDVLLVSPERLNNPDFRDNVLPKLTATAGLLVVDEAHCISDWGHDFRPDYRRLRTLLG
ELPDGVPVLATTATANNRVVTDVAEQLGVGTHGSGEALVLRGPLDRESLHLSVVRLPTAE
ARLAWLAERLGELPGSGIIYTLTVAGAHDVARLLGEHGYPVTAYTGKTDPAERQAAEDDL
LANRVKALVATSALGMGFDKPDLGFVVHVGAPSSPIAYYQQVGRAGRGVRRAEVVLLPGH
EDMQIWRYFGSLAFPGKRVVDELLDALAMADRPLSTAALEPKVELSRTRLEMVLKVLDVD
GAVRRVRGGWESTGQPWEYDARRYERIRVAREAEQQAMLDYQNITGCRMQFLLVQLDDPH
AAPCGRCDNCTGNHLSAEVSESIVDKTAQDLRRPGVELSSRRQWPTGMAGLGIKASGKIA
AGEQTEPGRALGRLTDIGWGNRLRELVGDSAADGEVPESVFQACVQVLAAWDWAERPVAV
VSLPSSSRPVLVRDFAQRIAKIGRLEYLGSLAADGERPRRANSAQRVADLWQRLSLPPEL
AEAVANLSGPVLLIDDVADTGWTMAIAARLLRQAGAPAVLPFALASTS
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
gtgcacaccgatcccgaggacaccccggccctccgccgccgctccgacgaactgctccgc
gccctcgccggggacaccgccgtcctgcgcgaggaccagtggaccgcgatcgaggcactg
gtcgcccaccggcggcgcgcgctggtcgtgcagcgcaccggctggggcaagtcggcggtg
tacttcctggccacggcgttgctgcgggagcggggcgcgggcccgacggtgatcatctcg
ccgctgctggcgctgatgcgcaaccagatctccgccgcggcgcgggccgggatccacgcg
gccacgatgaactcggccaaccagcaggactgggacgaggtgcaggccgacatcgccgcc
gggcgcaccgacgtgctgctggtcagccccgaacggctgaacaacccggacttccgcgac
aacgtgctgccgaagctgaccgccaccgccggactgctggtggtcgacgaggcgcactgc
atctccgactggggtcacgacttccgccccgactaccggcgcctgcgcaccctgctcggc
gagctgcccgatggcgtgccggtgctggcgaccacggccacggccaacaaccgggtggtc
accgacgtggccgagcagctcggcgtcggcacgcacggctccggtgaggcgctggtgctg
cgcggcccgctcgaccgcgagagcctgcacctgtcggtggtccggttgcccaccgccgaa
gcgcggctggcttggctggccgagcgcctcggcgagctgcccggctccgggatcatctac
acgctcaccgtcgccggcgcccacgacgtggccaggctgctcggcgagcacggttacccg
gtcaccgcctacaccggcaagaccgatccggccgaacgccaggccgccgaggacgacctg
ctggccaaccgggtcaaggcgctggtcgccacctccgcgctgggcatgggcttcgacaag
ccggacctcggttttgtggtgcacgtcggcgcgccgtcctcgccgatcgcctactaccag
caggtcggccgggccgggcgtggcgtgcgccgcgccgaggtggtgctgctgcccggtcac
gaggacatgcagatctggcgctacttcggctcgctggcctttcccggcaagcgcgttgtc
gacgaactgctcgacgcgctggccatggccgaccgtccactgtcgacggccgcgctggag
ccgaaggtggaactttcgcgcacccgcctggaaatggtgctcaaggtgctcgatgtggac
ggtgcggtgcgccgggtgcgcggtggctgggagagcaccgggcagccgtgggagtacgac
gcgcggcgctacgagcggatcagggtggcgcgcgaagccgagcagcaggcgatgctcgac
taccagaacatcaccggctgccggatgcagttcctgctcgtccagctcgacgacccgcac
gccgcaccgtgcggccggtgcgacaactgcaccggcaaccacctctcggccgaggtgtcc
gagtccattgtcgacaaaaccgcccaggatctgcgacggcccggggtggagctgtcctcg
cggcggcagtggccgaccggcatggccgggctgggcatcaaggcgtcgggcaagatcgcc
gcgggcgagcagaccgagcccggccgcgcgctcggccggttgaccgacatcggctggggc
aatcgtttgcgcgagctggtcggcgactccgccgccgacggtgaggtgcccgagtcggtg
ttccaggcctgcgtgcaggtgctcgccgcctgggactgggccgagcgcccggtcgcggtg
gtgtcgctgccgtcgagttcgcgcccggtgctggtgcgcgacttcgcgcagcggatcgcg
aagatcggcaggctggagtacctcggctcgctcgccgccgacggcgaacggccgcgccgg
gcgaacagcgcgcagcgcgtggccgacctgtggcaacggctgtccctgccgccggaactg
gccgaggccgtggcgaacctgagcggcccggtgctgctgatcgacgacgtggccgacacc
ggctggacgatggccatcgccgcccggttgctgcgccaggccggtgcgccggccgtgctg
ccgttcgcgctcgccagcacctcctga
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