Amycolatopsis sp. YIM 10: YIM_38605
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Entry
YIM_38605 CDS
T06270
Symbol
rng
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YIM_38605 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyy03019
]
YIM_38605 (rng)
03009 Ribosome biogenesis [BR:
amyy03009
]
YIM_38605 (rng)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
YIM_38605 (rng)
Messenger RNA biogenesis [BR:
amyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
YIM_38605 (rng)
Ribosome biogenesis [BR:
amyy03009
]
Prokaryotic type
rRNA processing factors
YIM_38605 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Plasmodium_HRP
RD3
Motif
Other DBs
NCBI-ProteinID:
QFU92877
UniProt:
A0A5P9PYQ6
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All DBs
Position
complement(8113695..8117147)
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AA seq
1150 aa
AA seq
DB search
MSNADTPAENTGGNPATPATASENGPLADLPARIRVHALAKLLGSSSREVLKQLVELGVS
ARSAQSSVPKEVALQVAEALGATGSATEEVAAGETAPVAEAPAPAVEAAPAPEPEPEPEP
EPARPAVHVPLFAAPSPVFLPPEPAAAPAKRAPKPEPEPEHAEADEEDTSAEGESSAHED
DDEGAGRRRRRRGRRGRGRGKGGDDARDDNEADEPEAKPQKDQKDQDKKAKADDAPAEKA
AEAGKSEEADEASDDADGEDSSRSRRRRRRRRKGSGEEDSESATSSDDPPNTVVHVRQGK
DKDKEKEADKPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAPILSEAEFLARREAVER
TMVVAEKGDATQIGVLEDGVLVEHFVTSSGSGSIVGNVYLGRVQNVLPSMEAAFIDIGRG
RNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRF
LVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRTASEGIAEEELDRDVRRLK
AQWDVIKEKAEAGKGKKSGSPTLLYEEPDLLVKVVRDLFTEDFAKLEVQGGTAWDTIQGY
VAHVAPDLADRLKRYTGNGDVFAEYRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDV
NTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRL
TECLGRDRTRHQVAEVTSLGLVQMTRKKVGTGLLEAFSTTCEHCKGRGVVVSTDQPKNGS
GGGNGGGNGGGGHQHGQSRRSRGRNKAEEQQPEPSKTEAPAPTPVQRESVVTAVQAMANA
SKSAKPEDGEKVPELNGRAPEPGRAEEAQEVPAESPAEAKVEAKRERRRERRSASRPAGG
PSAQTATTPEAAPAAETAQTPETAKVPETGQAPNAAQASEAATAPEAAKASEEADAAQAS
EAAKAPEAAEAPEAAQAGSAQAPEASKATEAAQAPEAPQVSEAAKAPEAAQAAEATQAAE
AGPAPEASRAPEAPEAAKAPEVAQAPEAAQAPEAAQAPEAAQAPEAAQAPEAAHAPEAAQ
ATEAAQADEATGTQAAETNEVTGTQEAEASEAEATPEVSVPAPAAKTTRRRARRVASRPA
GPPVGANENG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggacacacccgccgagaacaccggcgggaatcccgccacacctgcaacc
gcatcggagaacggcccgctggccgacctgcccgcccggatccgggtgcacgcactggcc
aagctgctcggttcgagcagccgcgaggtgctcaagcagctcgtcgagctgggcgtgagc
gcgcgcagtgcccagtccagcgtgcccaaggaggtcgcgctccaggtcgccgaggcgctc
ggtgccaccggcagtgccaccgaggaggtggctgccggggagaccgccccggtcgccgag
gccccggctcccgccgtcgaggccgctcccgcgccggagcccgagcccgaaccggagccg
gaaccggctcgcccggccgtgcacgtgccgctgttcgccgcgccgtcgccggtgttcctg
ccgcccgagcccgctgcggcgcccgccaagcgcgcgcccaagccggagcccgagcccgag
cacgccgaagccgacgaggaggacacctccgccgagggcgagtcctccgcgcacgaggac
gacgatgagggcgccggtcgccgtcgccgtcgtcgtggccgccgtggccgtggccgcggc
aagggtggcgacgacgccagggacgacaacgaggccgacgagccggaggccaagccccag
aaggaccagaaggaccaggacaagaaggccaaggcggacgacgccccggccgaaaaggcc
gccgaagcgggcaagagcgaggaggccgacgaggcctccgacgacgccgacggcgaggac
agcagccgttcgcgccgccgtcgccgccgccgtcgcaagggcagtggcgaagaggacagc
gaaagcgccaccagctccgacgacccgcccaacaccgtggtccacgtccgtcagggcaag
gacaaggacaaggaaaaggaagccgacaagccggctcgcgacgaggtgcgcagcgtgcgc
ggctctacccggctggaggccaagcgccagcgccgccgcgacggccgtgaggcgggccgc
cgccgggcgccgatcctgtccgaggccgagttcctcgcccgccgcgaagcggtcgagcgc
accatggtggtcgccgagaagggcgacgccacgcagatcggcgtgctcgaggacggcgtg
ctggtcgagcacttcgtgacctcgtcgggcagcggctcgatcgtcggcaacgtctacctc
ggccgggtgcagaacgtgctgccctcgatggaggccgcgttcatcgacatcggccgcggc
cgcaacgccgtgctctacgccggtgaggtggactgggacgccgccggcctggagggcaag
gcgcgcaagatcgagcaggccctgtccaccggtgacagcgtgctggtgcaggtcaccaag
gacccggtcgggcacaagggcgcccggctgaccacgcagatctcgctgcccggccgcttc
ctggtctacgtgccggccgggggtgccaccggtatttcgcgcaagctgccggagaacgag
cgacggcggctcaaggacatcctcaagcggatcgtgcccgaggacgcgggcgtgatcatc
cgcaccgcctcggagggcatcgccgaggaggagctggaccgcgacgtgcgccgcctcaag
gcgcagtgggacgtgatcaaggagaaggccgaggcgggcaagggcaagaagtccggctcg
ccgaccctgctctacgaagagccggacctgctggtcaaggtggtccgcgacctgttcacc
gaggacttcgccaagctggaggtccagggcggcacggcgtgggacaccatccagggctac
gtcgcgcacgtggcgcccgacctggccgaccggctcaagcgctacaccggcaacggtgac
gtcttcgccgagtaccggatcgacgagcagatcaccaaggcgctggaccgcaaggtgtgg
ctgccctcgggtggttacctggtcatcgaccgcaccgaggcgatgaccgtgatcgacgtc
aacaccggcaagttcaccggctccggcggcaatctcgaggagacggtgaccaggaacaac
ttggagtcggccgaggagatcgtgcgccagctgcggctgcgcgacatcggcggcatcatc
gtgatcgacttcatcgacatggtgctggagtccaaccgcgagctggtgctgcggcggctg
accgagtgcctcggccgtgaccgcacccgtcaccaggtggccgaggtgacctcgctgggt
ctggtgcagatgacccgcaagaaggtcgggaccgggctgctggaggcgttctcgaccacc
tgcgagcactgcaagggccggggcgtggtggtttcgaccgaccagccgaagaacggttcc
ggtggcggcaacggcggcggcaatggtggtggcgggcaccagcacggccagtcccggcgc
tcgcgtggtcgcaacaaggccgaggagcagcagccggagccgtcgaagacggaagccccg
gcgccgaccccggtgcagcgcgagtcggtggtcaccgccgtgcaggcgatggcgaacgcc
tcgaagtcggccaagccggaggacggggagaaggtccccgagctgaacggccgcgccccg
gaaccgggccgtgcggaagaggcccaggaggtgcccgcggagtcgccggccgaagccaag
gtcgaagcgaagcgggaacgccgtcgggaacgccgctcggcctccaggcccgcaggcggc
ccatccgcccagacggccaccacgccagaggccgctccggcagccgaaacggcccagacg
cccgagacagccaaggttccggagacgggccaggcgccgaacgcggcccaggcgagcgaa
gcagccaccgcgcccgaggcagccaaggcctcggaggaggccgacgctgctcaggcgagc
gaggcagctaaggcaccggaggcggctgaagcgcccgaggcggcccaggcaggctcggct
caggcacccgaggcgagcaaggcgactgaggcagctcaggcgcccgaagcgccccaggta
agcgaagcagcgaaggcgccagaagccgcccaggcggccgaagcgacccaggcggctgaa
gcaggcccggcacccgaggcaagccgggcgcctgaggcacctgaagcagcgaaggcaccc
gaagttgcccaggcacccgaggctgcccaggcacccgaggctgcccaggcacccgaggct
gcccaggcacccgaggctgcccaggcacccgaggctgcccacgcacccgaagctgctcag
gcgaccgaagccgcccaggcggacgaggccaccggaacccaggcggccgagaccaacgag
gtcaccgggacccaagaggccgaggcttctgaggccgaggcgacccccgaggtctccgtg
cccgctccggcggcgaagacgactcggcggcgtgcccgccgggtggcttcccggccggcc
gggccgccggtcggggccaacgaaaacggctag
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