Amycolatopsis sp. YIM 10: YIM_39335
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Entry
YIM_39335 CDS
T06270
Symbol
lgrB8
Name
(GenBank) Linear gramicidin synthase subunit B
Organism
amyy
Amycolatopsis sp. YIM 10
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Condensation
AMP-binding
Thioesterase
PP-binding
AMP-binding_C
Methyltransf_12
Methyltransf_31
Methyltransf_25
Methyltransf_23
Methyltransf_11
MTS
NodS
Ubie_methyltran
CMAS
Motif
Other DBs
NCBI-ProteinID:
QFU93019
LinkDB
All DBs
Position
complement(8288667..8298140)
Genome browser
AA seq
3157 aa
AA seq
DB search
MPRTIKDIYPLSPVQQGLLFHTLSAPESGVYFEQFSVRLEGELNATAFRDAWDRLVHRHD
VLRSAVQWEGLDTPVLVVFDRIELPWSEEDWRGLTPDEQATRLSETLAADRIEGFDLGTA
PLLRVGLYRLADDAWQVVWNYHHLLLDGWSSAAVLRELFLNYVALCAGEEPKLPPVRQYR
DYIGWLQQQDLGAAERFWRELLDGVTEPTVLGIDRTADGFRGDEDYDRRELVLPAELATR
LEEVARERRLTVNTVFQAAWSLLLSRYSGSDDVVFGVTSSGRPVELPGVEEIAGMFINTL
PARVRIPGDRTIADWLPEFQREETERRQFEFSPLAKVQDWSEVPSGATLFDSILVFENYP
TDFSVLDEVRDLRVTELFGIEQTNYPLTLLIELGARTKLKVWFDETRIDADVAERLLGHL
RALIEELIGDPGRRVTEIGLLTGPEREQLETWAGTGVDFGAPGCLHELVVRQAAKTPDAI
AVRCEGDELTYAELDQRSNQLAHHLIERGVTADRVVGLCLHRSTELVVAMLGVLKAGGAY
LPLDPDHPVDRLEFMLRDTAAVLVLTQDHLRAGLPDGVPVLTVDREWHGSTAAPDRPVKP
TDLAYVMYTSGSTGNPKGVMVEHAGVWNRLRWGQHHYDLDASAVVLQKTPYTFDVSVWEF
FWPLMVGAKLVLAKPEGHKDPDYLVRLVRDEAITVLHFVPSMLRYFLAADGVSELSSVER
VFCSGEALTADLRDRFFELFDAELHNLFGPTEASIEVTYWQCLPEHRGDPMVPIGRPIAN
VNCRILDQAGQQVPVGVPGELCLGGIAVARGYLGRPDLTDEKFIDDRFSGGRLYRTGDLA
RWRPDGVIEFLGRNDDQVKIRGQRVEPGEIESVILTHPAVREAAVTVHQVEGQQQLAAYV
VPAVDADEVRDWVRQRLPEYMVPAGVTMLDALPLSSNGKLNRGALPDPVWQGGEEFIPAR
SSLEQELAAIWAEVLGVERVGVLDNFFALGGDSILSIQMVSRAAQAGIHLTPAQVFREQT
VARLVEVAGHGPAVLAPQEPVTGPVELGPVQRWFFDLDLPVRDQWNQGITLVAKDEFDPD
RVRQALERVIAHHDVLRSRFTREGAHQVGVDEIAVPVVVSDDPVRTAHTGLDIEHGPLVK
GAVDGTTLVLACHHLVVDAVSWRFIVEDFERAYFDRGAFPPKTTAFAQWTERLASYDVTA
EEGYWRGVVDSITPLPADFDGPDTQATAVTRRISLPAEATARLAETARRMKARVDEMVLT
ACAQGLTDWTGDAGITVDVEGHGREPLFDDIDLSRTVGWFTVMRPVHLPVGAAPEVEAVR
AVKHALREAPHNGIGYGLLRERFKENPAVLFNFLGQLDGVAGGEFTLALDSSEGAHAGEN
TRHHPVEINAGISDGALTVELTYPGSRYEPSTMDILLAEIRGHLDALTVAAGEAAARAYL
PGDFPLAGAGAAELAAITATHGLVGDLYPATTMQQGLLFHTLSAPGSGVYFEQFSVRLEG
DLDPILFRESWQRLVDRHEALRSAVEWEGLDRPLMVVFDSIELPWSEEDWRDLDEDAQAE
RLSALLGKQREDGFELNRAPLVRVGLFRLGDEAWQVVWNFHHLILDGWSSAGVLRELFEI
YVPLCDGREPELHDVRQYHDYIEWLQRQDLEAAERYWRGLLAGVSEPTSLGVDRPSEGDR
RDEDYDRREIVLPAELGARLEEVARRRRLTVNTLFQAAWSLLLSRYSGTEDVVFGVTSSG
RPVDLAGAGNIAGLFINTLPARVTCPGGQRLGTWLSELQQAQIDQRQFEFSPLTKVQEWS
EVPAGVPLFESILVFENYPADFSVLERVSRLRVADLHSMEQTNYPLTVVVIPGRETTLKV
WFDQTRIDAGAAERLLAHLRGLLEELAGDEQRAVGEIGLLTAPEAELFERWADTAVDYGE
PECLHQVIARQAAATPDAVAVRCGQDELTYAELDRRANRLAHHLIDAGVRADKVVGVAMR
RSVELVVALLGVLKAGGAYVPLDPDYPAERLEFLIRDTGAKLVLTQEELRDRIPGTALAL
DTAEFDGADTDPGVGKPADLAYVIYTSGSTGKPKGVMLEHRGVWNRLRWMQAEYPIGDAD
VVLQKTPYTFDVSVWEFFWPLMIGARMVLAKPEGHRDPDYLTELIRDEGVTTLHFVPSML
RYFLAAEGVSELPSVKRVFCSGEALTADLRDRFFSLLDAELHNLFGPTEASIDVTYWQCL
PEHRGDPVVPIGRPIANITCRILDQAGQQTPIGVPGELCLGGIGLARGYLGRPKLTRQKF
VKDPFSDGRLYRTGDLARWRADGEIEFLGRNDDQVKIRGQRVEPGEIEAVLQDDPMVKHA
VVVADDGVLATFVEPDFTAVTDQSLSSAPWLRRHVDQWQSLYEQIYTEPVIEVDADFNTA
GWLSSYTGQPIPTGEMLEWRDRTVDRVLGLQPKRVLEIGCGTGILLTRIAPKVTSYHGTD
MSATAIEYVRGRLAESGDEHVVLEQREAVDFAGIRPDSVDVVVLNSVTQYFPDVAYLVEV
IRGAMDALVPGGSMFIGDVRNLLLLETLHASVQVAQAPGDVLAADVVQRVRHLARVENEL
LVDPGFFTRLREKVPELGRIEISPKEGAYDNELSRFRYDVVLEKAAKPHVQVEARWLDWT
RGELTWDAVATMLRGGARELIALSRVPNARVRRHHERWQRLLGASGDATLSEAIAGGDGD
AVDPEKLRALGRSCGYEVEISWAAGYADGAFDVVLRKAGQPRADFRPPVDGELLEPANMP
VRQELGAELRARLLDELARKLPAHMVPSTVTVLDAMPMTSSGKVDRKVLRATRSAHLSEK
PYVAPRDAVELRLARIWEKVLDVERVGVLDDFFELGGDSLVAIRLSTEVQRAFDVKITLA
DQLAARTVEQEAGLISGGGAAWRPLVEITAGEGTPVFCVHPAGGSVLCYGELARRLGRAR
PFYGLAPLGLEEGQEADDNIGVMADRYLAEVRAVRPHGPYHLAGWSLGGVVALEMAARLE
DAGERVELVAMIDSVAPELVDGDVDDVDVIAEFFAGVPLDLDHLRSLEPDAAIEAAMEQA
AKANALPSGLDATRLLRMRDVHKRHIAALVSHRAARYAGDVVLFRAADTPVTQPAYGWEN
TVKGRLEIIGVPGNHQTVLSSPGVGRIARELGARIPE
NT seq
9474 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaggaccatcaaggacatctacccgctttccccggtccagcagggcctgctcttc
cacaccctgtcggcgccggagtccggggtgtacttcgagcagttcagcgtgcggctggag
ggcgagctgaacgcgaccgccttccgcgacgcgtgggaccggctggtgcaccggcacgac
gtgctccgctcggccgtgcagtgggagggcctggacaccccggtgctggtggtgttcgac
cggatcgagctgccgtggtccgaagaggactggcgcggcctgaccccggacgagcaggcc
acccggttgtcggaaaccctggcggcggaccggatcgagggcttcgacctcggtaccgcg
ccgctgctgcgggtcggtctgtaccggctggccgacgacgcgtggcaggtggtctggaac
taccaccacctgctgctcgacggctggagttccgccgccgtgctccgcgagctgttcctg
aactacgtggcgttgtgcgcgggcgaggaaccgaagctgccgccggtgcggcagtaccgc
gactacatcggctggttgcagcagcaggatctcggtgcggcggaacggttctggcgcgaa
ctgctcgacggggtgaccgagccgacggtgctcggcatcgaccgcaccgccgacggattc
cgcggcgacgaggactacgaccgccgcgagctggtgctcccggccgagctggccacgcga
ctggaagaggtcgccagggaacgcaggctgacggtgaacacggtcttccaggccgcgtgg
tctctgctgctgtcgcggtattccggcagtgacgacgtggtgttcggcgtgacctcgtcc
gggcgtccggtggaactgcccggggtcgaggagatcgcgggcatgttcatcaacaccctg
cccgcgcgcgtgcggatcccgggtgaccgcacgatcgcggactggctgccggagttccag
cgcgaggaaaccgagcggcggcagttcgaattcagtccgctggccaaggtccaggactgg
agcgaggtgccctcaggcgccaccctgttcgacagcatcctggtgttcgagaactatccg
acggacttctccgtgctcgacgaggtccgggatctccgcgtcaccgagctgttcggcatc
gagcagaccaactatccgctgaccctgctgatcgaactcggcgcgcggaccaagctcaag
gtgtggttcgacgagacgcggatcgacgccgacgtcgccgagcgcctgctcgggcacctt
cgcgcgctgatcgaggaacttatcggggatccggggcgccgggtcaccgaaatcggcctg
ctcaccggacctgagcgcgagcaactggagacctgggctggcaccggcgtcgacttcggc
gcccccgggtgcctgcacgaactcgtggtgcgccaggccgcgaagacgccggacgccatc
gcggtccgctgcgagggcgacgaactgacctacgccgaactcgaccagcgctcgaaccag
ctcgcgcaccacctgatcgagcggggcgtgaccgcggaccgggtggtcggcctgtgcctg
caccggtcgaccgaactggtggtcgcgatgctcggggtgctcaaggcgggcggcgcgtac
ctgccgctcgaccccgaccacccggtggaccggctggagttcatgctccgcgacaccgcc
gcggtgctcgtgctgacccaggaccacctgcgggccgggctgccggacggggtgcccgtg
ctgaccgtggaccgcgaatggcacgggtccacggcggcccccgatcggccggtgaagccg
accgatctcgcgtacgtcatgtacacctcgggttccaccggcaatcccaagggcgtgatg
gtcgagcacgccggcgtgtggaaccggctgcgctggggtcagcaccactacgacctggac
gcttcggcggtggtgctgcagaagaccccgtacaccttcgacgtctcggtgtgggagttc
ttctggccgctgatggtcggcgcgaagctggtgctggccaagcccgaaggccacaaggac
ccggactacctggtccggctggtccgcgacgaagcgatcaccgtgctccacttcgtcccg
tcgatgctgcggtacttccttgccgcggacggggtttcggaactgtcctcggtggagcgg
gtgttctgcagcggggaggcgctgaccgcggatctgcgtgatcggttcttcgagttgttc
gacgcggaactgcacaacctgttcggtccgaccgaggcttcgatcgaggtcacctactgg
cagtgcctgccggagcaccgaggtgatccgatggtgccgatcgggcggccgatcgcgaac
gtcaactgccgcatcctggatcaggcgggccagcaggtgccggtcggcgtgccgggcgaa
ctctgcctcgggggcatcgccgttgcgcgcggttacctcggccgtcccgacctgaccgac
gagaagttcatcgacgaccggttctccggcggcaggctctaccgcaccggcgacctggcg
cgctggcggccggacggggtgatcgaattcctcggccgcaacgacgaccaggtcaagatc
cgcggtcagcgcgtcgaaccgggtgagatcgagtcggtcatcctgacccatcccgccgtg
cgtgaggccgcggtcaccgtgcaccaggtcgaggggcagcagcagctcgccgcgtacgtg
gtgcccgcggtggacgccgacgaggtccgcgactgggtgcggcagcggctgcccgagtac
atggtgcccgccggcgtcaccatgctggacgcgttgccgttgtcatccaacggaaagctg
aatcgcggggcgctgcccgacccggtgtggcagggcggtgaggagttcatcccggcgcgg
tcgtcgctggagcaggagctggccgcgatctgggccgaggtgctcggcgtcgaacgcgtc
ggcgtgctggacaacttcttcgccctcggcggcgactcgatcctgtcgatccagatggtc
tcgcgggccgcgcaggcgggcatccacctgaccccggcgcaggtgttccgcgagcagacc
gtggcgcggctggtcgaggtggccgggcacgggcccgcggtgctcgcgccgcaggaaccg
gtgaccgggccggtcgagctgggcccggtgcagcgctggttcttcgacctggacctgccg
gtgcgcgaccagtggaaccagggaatcaccctggtggcgaaggacgaattcgacccggac
cgcgtgcgccaggccctggaacgcgtgatcgcacaccacgacgtgcttcgctcgcggttc
acccgggaaggcgcgcaccaggtcggcgtcgacgagatcgccgtgccggtggtcgtcagc
gatgacccggttcgcaccgcgcacaccggtctcgacatcgagcacggaccgttggtgaag
ggcgccgtcgacggcaccacgctggtccttgcctgtcaccacctggtggtcgacgcggtc
agctggcggttcatcgtcgaggacttcgaacgcgcctacttcgaccgaggcgcgttcccg
ccgaagaccaccgcgttcgcgcaatggaccgagcgcctcgcctcgtacgacgtgaccgcc
gaagagggctactggcggggcgtggtcgactcgatcactccgctgcccgccgacttcgac
ggtcccgacacgcaggcaaccgctgtgaccaggcggatctcgctgcccgcggaagcgacg
gcacggctggccgagaccgcgcgccggatgaaagcgcgggtggacgagatggtgctgacc
gcgtgcgcgcagggcctgaccgactggaccggcgacgccgggatcaccgtcgatgtggag
ggccacggccgcgaaccgctcttcgacgacatcgacctctcgcgcacggtcggctggttc
accgtgatgcgcccggtgcacctgccggtcggcgccgcacccgaggtcgaggcggtgcgc
gcggtcaagcacgccctgcgggaggcgccgcacaacggcatcggctacggcctgctgcgg
gagcggttcaaggaaaacccggcggtgctgttcaacttcctgggccagctcgacggggtg
gccggtggtgaattcaccctggcgctggactcgtcggagggcgcgcacgcgggggagaac
acccggcaccacccggtcgagatcaacgcgggcatcagcgacggcgcgctgaccgtcgaa
ctgacctatcccggctcccgctatgagccgtccaccatggacatcctgctggcggagatc
cgcgggcacctcgacgcgctgaccgtcgcggccggtgaagcggcggcgcgggcgtacctg
ccgggcgacttcccgctggccggggccggggccgccgaactggccgcgatcaccgccacc
cacggcctggtcggcgacctgtacccggccaccaccatgcagcagggcctgttgttccac
accctgtccgcgcccggttcgggggtctacttcgaacagttcagcgtccggctcgaaggc
gatctcgatccgatcctcttccgcgagtcctggcagcggctggtcgaccggcacgaggcg
ctgcggtcggcggtggaatgggaagggctcgaccggccgctgatggtggtgttcgactcg
atcgagctgccatggtccgaagaggactggcgcgacctggacgaggacgcgcaggccgag
cggctgtcggcgttgctggggaagcagcgcgaggacgggttcgaactgaaccgggcgcca
ctggtgcgcgtcgggctgttccggctgggcgacgaggcgtggcaggtggtctggaacttc
caccacctgatcctggacggctggagttcggccggcgtgctgcgcgagctgttcgagatc
tacgtgccgctgtgcgacggccgggagccggaactgcacgacgtccggcagtaccacgac
tacatcgaatggttgcagcggcaggatctcgaagccgcggaacggtactggcgcggtctg
ctcgccggggtctcggaaccgacgtcgctcggggtggatcgtccgtccgaaggggaccgt
cgcgacgaggactacgaccggcgcgagatcgtgctgcccgccgagttgggcgcgaggctg
gaagaggtcgcccgccgccgcaggctgacggtgaacacgctgttccaggccgcgtggtcg
ctgctgctttcgcggtactcgggcaccgaggacgtggtgttcggcgtgacttcctccggt
cgtcccgtcgatctggccggggccgggaacatcgccgggctgttcatcaacaccctgccc
gcgcgggtgacctgcccgggtggccagcggctcggcacctggctgagcgaactgcagcag
gcgcagatcgaccagcgccagttcgaattcagcccgctgaccaaggtgcaggagtggagc
gaggtgccggccggggtgccgctgttcgagagcatcctggtgttcgagaactacccggcg
gacttctccgtgctcgaacgggtcagccgcctgcgggtggccgatctgcacagcatggag
cagaccaactacccgctgaccgtggtggtcatcccgggccgcgagaccacgctgaaggtg
tggttcgaccagacccggatcgacgccggcgcggcggaacggctgctcgcgcacctgcgc
ggcctgctggaggaactggcgggcgacgagcagcgcgcggtcggcgagatcgggctgctc
accgcgccggaggcggaactgttcgagcggtgggcggacaccgcggtcgactacggcgag
cccgagtgcctgcaccaggtgatcgcccggcaggccgccgcgacgccggacgcggtcgcg
gtccgatgtggacaggacgaactcacctacgccgaactggatcgccgcgcgaaccggctg
gcgcaccacctgatcgatgcgggtgtgcgcgcggacaaggtggtcggcgtcgcgatgcgg
cgttccgtcgaactggtggtggcgctgctcggcgtgctcaaggcgggtggcgcgtatgtg
ccgctggacccggactacccggccgagcgcctggagttcctgatccgcgacaccggcgcg
aaactggtgctcacccaggaagaactgcgcgaccgcatcccgggcaccgcgctggcgctg
gacaccgccgagttcgacggcgcggacaccgatcccggcgtcggcaagcccgccgacctg
gcgtacgtcatctacacctccggttccaccggcaagcccaagggcgtcatgctcgaacac
cgcggggtgtggaaccggttgcgctggatgcaggcggagtatccgatcggcgacgcggac
gtggtgctgcagaagactccgtacaccttcgacgtttcggtgtgggagttcttctggccg
ctgatgatcggggcgcgcatggtgctggcgaagccggaaggccaccgcgatccggactac
ctcaccgagctgatccgggacgagggcgtcacgaccctccacttcgtcccatcgatgttg
cggtacttccttgccgccgaaggggtttcggaacttccttcggtcaagcgggtgttctgc
agtggtgaggcgttgacggcggatctgcgggaccggttcttctcgttgctggacgccgaa
ctgcacaacctgttcgggccgaccgaagcctcgatcgacgtgacctactggcagtgcctg
ccggagcacaggggtgatccggtggtgccgatcggccgtccgatcgcgaacatcacctgc
cgcatcctcgaccaggccgggcagcagaccccgatcggcgtgcccggcgagctgtgcctg
ggcgggatcgggctggccaggggctatctcggccggccgaagctgacccggcagaagttc
gtcaaggacccgttctccgacggcaggctctaccgcaccggcgatctcgcgcgctggcgg
gccgacggcgagatcgagttcctcggccgcaacgacgaccaggtcaagatccgcggccag
cgcgtcgaaccgggtgagatcgaggccgtgctccaggacgaccccatggtcaagcacgcg
gtcgtggtggccgacgacggcgtgctcgccaccttcgtcgagccggacttcaccgcggtc
accgaccagtcgctgtcctcggcgccctggctgcggcggcacgtggaccagtggcagtcg
ctctacgagcagatctacaccgagccggtgatcgaggtcgacgccgacttcaacaccgcg
ggctggctctccagctacaccggtcagccgatcccgaccggcgagatgctcgaatggcgc
gaccgcacggtggaccgcgtgctcggcctgcaaccgaagcgggtgctggagatcggctgc
ggcacgggcatcctgctcacccgcatcgcgccgaaggtgaccagctaccacggcaccgac
atgtcggccacggccatcgagtacgtgcgcggcaggctcgccgaaagcggggacgagcac
gtggtgctggagcagcgcgaagccgtcgacttcgccgggatccggccggacagcgtggac
gtggtggtgctcaactcggtcacccagtacttcccggacgtggcctacctggtcgaggtc
atccggggtgcgatggacgcgctggtgccgggcggctcgatgttcatcggcgacgtgcgc
aacctgctgctgctggaaaccctccacgcgtcggtccaggtcgcgcaggcaccgggggac
gtgctcgcggcggacgtggtgcagcgggtccggcacctggcgcgcgtggagaacgagctg
ctggtcgatcccgggttcttcaccaggctgcgggagaaggtgccggagctgggccggatc
gagatcagcccgaaggaaggcgcctacgacaacgagctgagccggttccgctacgacgtg
gtgctggagaaggcggccaagccacacgtccaggtggaggcgcggtggctcgactggacg
cgcggcgaactgacctgggacgcggtggccaccatgctgcgaggcggggcgcgggaactg
atcgcgctctcccgggtgccgaacgcgcgggtgcggcggcaccacgagcgctggcagcgg
ttgctcggtgcctccggtgacgcgaccctgtccgaagccatcgccgggggagacggcgac
gccgtggacccggagaaactgcgggcgctcgggcgttcgtgcgggtacgaggtggagatc
agctgggccgccgggtacgccgacggcgcgttcgacgtggtcctgcgcaaagccgggcag
ccgcgcgccgacttccgcccgccggtcgacggggaactgctggaaccggcgaacatgccg
gtgcgccaggaactcggggccgaactgcgcgccaggctgctggacgagctggcgcggaaa
ctgcccgcgcacatggtgccgtccacggtgaccgtgctcgacgcgatgccgatgaccagt
tccggcaaggtcgaccgcaaggtgctccgggccacgcgcagcgcgcacctgtcggaaaag
ccttacgtggccccgcgcgacgcggtggaactgcggctggcgcgcatctgggagaaggtg
ctcgacgtcgaacgtgtcggtgtgctggacgacttcttcgaactcggcggcgattcgctg
gtcgcgatccggctgtccaccgaggtgcagcgcgccttcgacgtgaagatcacgctcgcc
gaccagctcgccgcacgcacggtcgaacaggaggccgggctgatcagcggtggcggcgcg
gcctggcggccgctggtggagatcaccgcgggcgagggcacgccggtgttctgcgtgcac
ccggccggtggcagcgtgctctgctacggcgaactggcccgccggctcggccgcgcccgg
ccgttctacgggctggccccgctcggcctggaggaagggcaggaggccgacgacaacatc
ggcgtgatggccgatcggtatctcgccgaggtgcgcgcggtccggccgcacgggccgtac
cacctggccggctggtcgctcggcggtgtggtcgcgctggaaatggcggccaggctggaa
gacgcgggcgagcgcgtcgaactggtcgcgatgatcgactcggtggcgccggaactggtc
gacggtgacgtggacgacgtcgacgtgatcgccgagttcttcgccggtgtgccactggac
ctggaccacctgcgctcgctcgaaccggacgccgccatcgaggcggcgatggagcaggcg
gcgaaggcgaacgcgctgccgtccggtttggacgccacccggctgctgcgcatgcgggat
gtccacaagcggcacatcgccgccctggtttcccaccgggcggccaggtacgcgggggac
gtggtgctgttccgcgccgcggacaccccggtcacccagcccgcgtacggctgggagaac
acggtcaagggcaggctggagatcatcggcgtgccgggcaaccaccagaccgtgctgagt
tcccccggcgtcggccggatcgcccgcgaactcggcgcccgcatcccggaatga
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