Amycolatopsis sp. YIM 10: YIM_40455
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Entry
YIM_40455 CDS
T06270
Symbol
recD5
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
YIM_40455 (recD5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_40455 (recD5)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
YIM_40455 (recD5)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
YIM_40455 (recD5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
NAT10_TcmA_helicase
AAA_22
PIF1
PhoH
nSTAND3
TraI_hel_assoc_N
HHH
DEAD
NPHP3_N
NACHT
AAA_16
AAA
SLFN-g3_helicase
SdrD_B
DAP3
Motif
Other DBs
NCBI-ProteinID:
QFU93228
LinkDB
All DBs
Position
complement(8700684..8702888)
Genome browser
AA seq
734 aa
AA seq
DB search
MTEPFRHATLEATLERITFASEDTGYTVAKVDTGRGGDLVTVVGALLGAQPGEALRMRGR
WGSHPQYGRQFHVEDYRTVLPATIQGIRRYLGSGLIKGIGPKLADKIVEHFGVDSLEVIE
HSPERLIEVPKLGPKRTKLIADAWEEQKAIKEVMVFLQGVGVSTSLAVRIYKQYAERSID
VVRTEPYRLATDVWGIGFKTADTIAKAVGIPHDSPQRIKAGLQFTLSEATGNGHCFLPDT
ELIAEAIKILQVDTGLVIDCLAELVDEEGVVREELPDGDDRVSAIYLVPFHRAELSLAGQ
LMRLLRTSADRLPAFADVDWGKALAWLHRQTKAELAPAQEEAVKLALTEKVAVLTGGPGC
GKSFTVRSIVTLAAAKRAKVLLAAPTGRAAKRLTELTGHEAATVHRLLELKPGGDAAYDK
DRPLEADLVVVDEASMLDVLLANKLLKAIPPGAHVLLVGDVDQLPSVGAGEVLRDLLAPG
TPIPHVRLTQIFRQAGESGVVTNAHRINGGDFPITKGLSDFFHFDVDDPEEAAKLTVDVV
ARRIPKKFGLNPRRDVQVLAPMHRGPAGAGALNSLLQEAVTPPKEGVPERRFGGRVFRVG
DKVTQTRNNYDKGANGVFNGTQGVVVAMDLDEQTLLVRTDEDEDVEYEFAELDELIHAYA
VSIHRSQGSEYPCVVVPLTTSAWMMLQRNLLYTAVTRAKKLVVLVGSKKAIGQAVRTVGA
GRRHTALAHRLRAA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagccgttccgtcacgccacgctcgaggcgacgctggagcggatcaccttcgcc
agcgaggacaccggttacaccgtggcgaaggtggacaccggacgcggcggcgacctggtc
accgtggtcggcgcgctgctcggcgcgcagccgggtgaggcgctgcggatgcgcgggcgc
tggggttcgcacccgcagtacgggcgccagttccacgtcgaggactaccggaccgtgctg
cccgccaccatccagggcattcgccgctacctcgggtccgggctgatcaagggcatcggg
ccgaaactggcggacaagatcgtcgagcacttcggggtggactcgctcgaggtgatcgag
cacagcccggagcggctgatcgaggtgccgaagctgggcccgaagcgcaccaagctgatc
gccgacgcctgggaggagcagaaggcgatcaaggaggtgatggtcttcctgcagggcgtc
ggggtgtccacctcgctggccgtgcggatctacaagcagtacgccgaacgctcgatcgac
gtggtgcgcacggagccgtaccggctggccaccgacgtctgggggatcggcttcaagacc
gccgacaccatcgcgaaggcggtcggcatcccgcacgacagtccacaacggatcaaggcg
ggcctgcagttcaccctgtccgaggcgaccggcaacggccactgcttcctgcccgacacc
gagctgatcgccgaggcgatcaagatcctccaggtggacaccgggctggtgatcgactgc
ctggccgaactggtcgacgaggagggcgtggtccgcgaagagctgcccgacggcgacgac
cgcgtttcggccatctacctggtgccgttccaccgcgcggagctgtcgctggccgggcag
ctgatgcggttgctgcgcaccagcgcggacaggctgcccgcgttcgcggacgtggactgg
ggcaaggcgctggcgtggctgcaccggcagaccaaggccgaactggcgccggcgcaggag
gaggcggtcaagctcgcgctgaccgagaaggtcgccgtgctcaccggcgggccgggctgc
ggcaagagcttcaccgtgcgctcgatcgtgacgctcgccgcggccaaacgggcgaaggtg
ctgctggccgcgcccaccggccgcgccgccaagcggctcaccgagctgaccgggcacgag
gccgcgaccgtgcaccggctgctggaactcaagccgggcggggacgccgcctacgacaag
gaccggccgctcgaagcggatctggtggtggtcgacgaggcgtcgatgctcgacgtgctg
ctggcgaacaaactgctcaaggccattccgccgggagcgcacgtgctgctggtcggagac
gtcgaccagctgccgtcggtcggtgccggtgaggtgctgcgcgacctgctggcgcccggc
acgccgattccgcacgtccggctgacgcagatcttccgccaggccggcgagtccggtgtg
gtcaccaacgcgcaccgcatcaacggtggcgacttcccgatcaccaagggcctgagcgac
ttcttccacttcgacgtcgacgacccggaggaggccgcgaagctgaccgtggacgtggtg
gcccgccgcatcccgaagaagttcggcctgaacccgcgacgcgatgtgcaggtgctggcg
ccgatgcaccgcggcccggcgggcgcgggcgcgttgaactcgctgttgcaggaggcggtc
acaccgccgaaggagggcgtgccggagcggcggttcggcgggcgcgtcttccgcgtcggg
gacaaggtcacgcagaccaggaacaactacgacaagggcgcgaacggcgtgttcaacggc
acgcagggcgtggtggtcgcgatggacctcgacgagcagacgctgctggtgcgcaccgac
gaggacgaggacgtcgagtacgagttcgccgaactggacgagctgatccacgcctacgcg
gtgagcatccaccgctcgcagggcagcgagtacccgtgcgtggtggtcccgctgaccacc
agcgcgtggatgatgttgcagcgcaacctgctctacaccgcggtcacccgcgcgaagaag
ctcgtggtgctggtcggctcgaaaaaggcgatcggccaggcggtccgcacggtcggcgcc
gggcgaaggcacaccgccctagcccaccgcctccgcgctgcttaa
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