Amycolatopsis sp. YIM 10: YIM_41420
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Entry
YIM_41420 CDS
T06270
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YIM_41420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_41420
Enzymes [BR:
amyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YIM_41420
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YIM_41420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
QFU93421
LinkDB
All DBs
Position
complement(8920037..8920747)
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AA seq
236 aa
AA seq
DB search
MAGAAEDDRVPPAVEPMLAQAGPLPDDTRYSYEFKWDGYRACLRVSPSGAIRLNSRNGND
LTAEYPELAGGLGDMLGGRAAVFDGEIVALDEGGVPDFTLLQNRRTRRHALSFFAFDLLR
LGADALENRTYRERRELLAGLEPGSPNLIAIPPTYSHADLSATGLNPQGLLDVARRSRLE
GLVAKVGESRYHPGRRPPPPGCTKPWTDCWPGVRSAPTAGWSRTTSGKKPASAEPP
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atggccggtgcagccgaagacgaccgcgtgccgcccgccgtggagccgatgctcgcccag
gccggcccgctgccggacgacaccaggtacagctacgagttcaaatgggacggctaccgc
gcctgcctccgggtgagcccgtccggcgcgatccgcctgaacagccgcaacggcaacgac
ctcaccgccgaatatcccgagctggccggcggcctcggtgacatgctcggcgggcgggcc
gccgtgttcgacggtgagatcgtcgcgctcgacgagggcggcgtaccggacttcaccctc
ctgcagaaccggcgcacccgccgccacgcgctcagcttcttcgccttcgacctgctccgg
ctcggtgccgacgcactggagaaccggacctaccgcgagcgccgcgaactgctcgccggg
ctcgaacccggaagcccgaacctgatcgccatcccgcccacgtacagccacgccgacctg
tccgccaccggcctcaacccgcagggcctgctcgacgtcgcccggcggtcacgactggag
ggactggtcgcgaaggtcggcgaatcccggtaccaccccggccgccgtccaccgccgcca
ggttgcacgaagccatggaccgactgctggccgggcgtccgcagcgcaccgacggcaggc
tggtcaaggacaacctctggaaagaagccggcgtcagccgagccaccatga
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