Amycolatopsis sp. YIM 10: YIM_42505
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Entry
YIM_42505 CDS
T06270
Symbol
dapE5
Name
(GenBank) Succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00300
Lysine biosynthesis
amyy01100
Metabolic pathways
amyy01120
Microbial metabolism in diverse environments
amyy01230
Biosynthesis of amino acids
Module
amyy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
YIM_42505 (dapE5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
amyy01002
]
YIM_42505 (dapE5)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
YIM_42505 (dapE5)
Peptidases and inhibitors [BR:
amyy01002
]
Metallo peptidases
Family M20
YIM_42505 (dapE5)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
DUF1839
Motif
Other DBs
NCBI-ProteinID:
QFU93636
UniProt:
A0A5P9PYZ8
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Position
complement(9139747..9140808)
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AA seq
353 aa
AA seq
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MALDLRADPIDLTAALVDVPSESGQEAELADAVEAALRADAPHLEVVRNGDAVLARTNLG
RASRVILAGHLDTVPANNNLPVRREGGHLHGLGTVDMKGGDAVFLHLAAAITEPKHDVTF
VFYDCEEVDAARNGLGRIERELPDWLRADLAIVGEPSNAVIEAGCQGTMRVRLKVTGQRA
HTARAWRGSNAIHGLVEPLRRLAEYQPRTPKIDGLTYREGLQAVRVHGGVAGNVVPDEAV
LEINHRFAPDRSPAQAEQHLRQLFDGFDLSVVDISAGALPGLDAPAAVELVQAAGGQPVA
KLGWTDVARFSALGMAAVNFGPGDPALAHTQQEHVAVSDITQVTKVLRTFLSR
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggctttggacctgcgtgccgacccgatcgacctgaccgccgcactggtggacgtgccc
agcgagtccggtcaggaggcggagttggccgacgcggtggaggcggccctgcgtgcggac
gccccgcacctcgaggtggtccgcaacggggacgcggtgctcgcgcgcacgaacctcggc
cgggcgagccgggtgatcctggccgggcacctggacaccgtgccggccaacaacaacctg
ccggtccgccgtgaaggcggccacctgcacggccttggcacggtggacatgaagggcggc
gacgcggtcttcctgcacctcgccgcggcgatcaccgagccgaagcacgacgtcaccttc
gtcttctacgactgcgaggaggtcgacgccgcgcgcaacgggctcggccgcatcgagcgg
gagctgccggactggctgcgcgcggacctggcgatcgtcggcgagccgtcgaacgcggtg
atcgaggccggttgccagggcaccatgcgcgtgcggctgaaggtgaccgggcagcgggcc
cacaccgcccgtgcgtggcgcgggtcgaacgcgatccacggcctggtcgagccgctgcgg
cggctggccgagtaccagccgcgcacgccgaagatcgacggcctgacctatcgcgagggc
ttgcaggcggtgcgtgtgcacggcggcgtggcaggcaacgtggtgccggacgaggcggtg
ctggagatcaaccaccggttcgcccccgaccgctcgcccgcgcaggccgaacagcacctg
cgccagctcttcgacgggttcgatctgtccgttgtggacatttcggcgggggcgctgccg
ggactggacgcaccggccgcggtcgagctggtccaggcggccggcgggcagccggtggcg
aagctgggctggaccgacgtggcgcggttctccgcgctgggcatggcggcggtcaacttc
gggccgggcgacccggcgctggcgcacacccagcaggagcacgtcgcggtttcggacatc
acccaggtgaccaaggtgctccggaccttcctgagccgttga
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