Amycolatopsis sp. YIM 10: YIM_43615
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Entry
YIM_43615 CDS
T06270
Symbol
sucD2
Name
(GenBank) Succinyl-CoA ligase [ADP-forming] subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy00020
Citrate cycle (TCA cycle)
amyy00640
Propanoate metabolism
amyy00660
C5-Branched dibasic acid metabolism
amyy00720
Other carbon fixation pathways
amyy01100
Metabolic pathways
amyy01110
Biosynthesis of secondary metabolites
amyy01120
Microbial metabolism in diverse environments
amyy01200
Carbon metabolism
Module
amyy_M00009
Citrate cycle (TCA cycle, Krebs cycle)
amyy_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
YIM_43615 (sucD2)
00640 Propanoate metabolism
YIM_43615 (sucD2)
00660 C5-Branched dibasic acid metabolism
YIM_43615 (sucD2)
09102 Energy metabolism
00720 Other carbon fixation pathways
YIM_43615 (sucD2)
Enzymes [BR:
amyy01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
YIM_43615 (sucD2)
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Gene cluster
GFIT
Motif
Pfam:
CoA_binding
Ligase_CoA
Succ_CoA_lig
CoA_binding_2
KARI_N
GFO_IDH_MocA
F420_oxidored
Motif
Other DBs
NCBI-ProteinID:
QFU93857
UniProt:
A0A5P9Q1I9
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All DBs
Position
complement(9384276..9385166)
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AA seq
296 aa
AA seq
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MSIFLNENSKVIVQGLTGSEGTKHATKMIKSGTNIVGGVNARKAGQTVTIEGKELKVFGS
VEEAIKETGADVSVVFVPPKFAKDAVVEAIDAEIGLAVVITEGIPVHDSAYFWAHAVAKG
NKTRIIGPNCPGVISPGKSNAGIIPANITGPGKIGLVSKSGTLTYQMMYELRDIGFTTAV
GIGGDPVIGTTHIDALAAFQDDPDTEVIVMIGEIGGDAEERAADYIKANVTKPVVGYVAG
FTAPEGKTMGHAGAIVSGSSGTAAAKKEALEAAGVKVGKTPTETANLARELYNNLP
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatcttcctgaacgagaacagcaaggtcatcgtgcagggcctgaccgggtccgag
ggcaccaagcacgcgaccaagatgatcaagtccggcaccaacatcgtgggcggcgtgaac
gcccgcaaggccggccagacggtgaccatcgagggcaaggaactcaaggtcttcggctcc
gtcgaggaggccatcaaggagaccggcgccgacgtctcggtggtcttcgtgccgccgaag
ttcgccaaggacgccgtggtcgaggccatcgacgcggagatcggcctggccgtggtgatc
accgagggcatcccggtgcacgactcggcctacttctgggcgcacgcggtcgccaagggc
aacaagacccggatcatcgggccgaactgccccggcgtgatcagccccggcaagtcgaac
gcgggcatcatcccggcgaacatcaccggccccggcaagatcggcctggtgtccaagtcg
ggcacgctgacctaccagatgatgtacgagctgcgcgacatcggtttcaccaccgcggtc
ggcatcggcggtgacccggtcatcggcaccacgcacatcgacgcgctcgccgccttccag
gacgacccggacaccgaggtcatcgtgatgatcggtgagatcggtggcgacgccgaggag
cgggccgcggactacatcaaggccaacgtgaccaagccggtcgtcggctacgtcgcgggc
ttcaccgcgcccgagggcaagaccatgggccacgcgggcgcgatcgtctccggttcgtcc
gggaccgcggccgcgaagaaggaggccctcgaggccgccggcgtgaaggtcggcaagacg
ccgaccgagaccgccaacctggcgcgggagctgtacaacaacctgccctga
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