Amycolatopsis sp. YIM 10: YIM_47895
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Entry
YIM_47895 CDS
T06270
Symbol
end
Name
(GenBank) putative endonuclease 4
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
YIM_47895 (end)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_47895 (end)
Enzymes [BR:
amyy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
YIM_47895 (end)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
YIM_47895 (end)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
QFU94704
UniProt:
A0A5P9Q2R6
LinkDB
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Position
complement(10218912..10219688)
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AA seq
258 aa
AA seq
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MQIGAHVRDDDPLPAARERGAEVVQFFLSDPQGWKAPKRHPGADEISADEIEVFIHSPYL
INVASLNNRIRIPSRKGVAQHAAGSAEVGAKGLIVHGGHVRKGEDPAEGLANWRKLFERQ
AESGGFAVPILIENTAGGDGAMTKDLEMIARLWDQVGEFGAGFCLDTCHAYAAGWQLDGV
VDRVKAITGRIDLVHLNNSRDEFGSTRDRHANVVGGDGTIDPELLAEVARTAGAPVVVET
PGDGQAADIAYLREALAR
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcggtgcgcatgttcgtgacgacgacccgttgcccgcggccagggaacggggc
gccgaagtggtgcagttcttcctctccgacccgcagggctggaaggcgccgaaacgccat
cccggcgcggacgagatttcggcggacgagatcgaggtcttcatccattcgccctacctg
atcaacgtggcctcgctgaacaaccgcatccgcatcccgtcgcgcaagggcgtggcgcag
cacgcggccggttccgccgaggtcggcgcgaagggcctgatcgtgcacggcggccacgtc
cgcaagggcgaggacccggccgaggggctggcgaactggcggaagctgttcgagcggcag
gccgaaagcggcggcttcgcggtgccgatcctgatcgagaacaccgcgggcggcgacggc
gcgatgaccaaggacctggagatgatcgcccggctctgggaccaggtcggcgagttcggc
gcgggtttctgcctggacacctgccacgcctacgcggcgggctggcagctcgacggcgtg
gtggaccgggtcaaggccatcaccggccggatcgacctggtgcacctcaacaactcgcgc
gacgagttcggctccacccgcgaccggcacgcgaacgtggtcggcggcgacggcacgatc
gatcccgagctgctggccgaggtggcgcgcaccgcgggcgcgccggtggtggtggagacg
ccgggtgacggccaggccgccgacatcgcctacctgcgggaggcgctggcccggtga
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