Amycolatopsis sp. CA-230715: HUW46_01472
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Entry
HUW46_01472 CDS
T10444
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amyz Amycolatopsis sp. CA-230715
Brite
KEGG Orthology (KO) [BR:
amyz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amyz03019
]
HUW46_01472
Enzymes [BR:
amyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HUW46_01472
Messenger RNA biogenesis [BR:
amyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HUW46_01472
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_22
NACHT
T2SSE
nSTAND3
nSTAND_NTPase5
LYTB
AAA_25
ABC_tran
PhoH
TsaE
MCM
Motif
Other DBs
NCBI-ProteinID:
QWF78077
LinkDB
All DBs
Position
complement(1555479..1559360)
Genome browser
AA seq
1293 aa
AA seq
DB search
MSTRSPLDGLRARLPELMPRDRNRLRRRIDGARKARDAESVLAQITRDVEAAEQRVELRR
ASVPRVEYPEELPVSKRKDDIAAAIREHQVVIVAGETGSGKTTQLPKICLELGRGVLGQI
GHTQPRRLAARTVADRIAGELGTEPGATVGYKVRFTDHSGDDTLVKLMTDGILLAEIQTD
RMLRRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPELKVIITSATIDPERFSRHFDDAP
IVEVSGRTYPVEVRYRPVVDPDDPDPDTDRDQTQAILDAVDELSAEGPGDILVFLSGERE
IRDTADALSKRDLRNTEILPLYARLSAADQHRVFQRHTGRRVVLATNVAETSLTVPGIKY
VIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYTEDDFDARPE
FTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRQVTDGVHLLTELGALDPSITDV
HKRLTTVGRKLAQLPVDPRMGRMVLEAAANGCVREVMIIAAALSIQDPRERPAEHQQAAG
EKHARFADKTSDFLAYLNLWEYLREQQKALSANQFRKLCRAEFLNYLRVREWQDIFSQLR
QLAKQLDITLNTEPADPQHVHTALISGLLSHIGLKDPATGEYLGARGAKFSVFPGSALFK
KQPRWVMSAELVETSRLWGRVNARIEPEWVEPLAQHVVKRSYSEPHWERRQGAVMAMEKV
TLYGVPLVAGRRVNYGRIDPELSRELFIRHALVEGDWQTNHRFFKENRALLDEVEDLENR
ARRRDILVDDETLFEFYDQRVGEDAVSSRHFDSWWKKTRRTEPDLLSFEKTMLINATAGD
VSEQDYPDTWAQGALRFGLTYQFEPGADADGVTVHIPLPVLNQVRADGFDWQVPGLREEL
LTALIKSLPKQVRRNFVPAPDHAKLVLARANPDDGAVTDVAARELEDFRGVPIPPEAWQP
ELVPEHLKVTFRVTDDKGRKLAEGKDLEALKRKLSGEVRATISTAANSIERAGLTSGAFG
ELPKVFESTQRGHAVKAYPALVDEGETVAVRMLDTPAQQEHAMWLGTRRLLRLAVPSPMK
FITRSLGNQAKLVLNRNPHGSVPALLEDCISCAIDKLVADNGGPVWDEAGFGALAEKVRT
GLNSTVLSVLSEVERILRAANDAETALADAKGPAESLHDIRAQLDGLVYKGFVTRTGFDR
LSNVVRYLRGIERRIDKLRTDPARDIERLREVAWVTEEYQRLLDAVPPGTSPSPALRDVR
WMIEELRVSFFAQTLGTAHPVSVKRVLRAMDAA
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcgatcccccctcgacgggctgcgggcccgtctccccgagctgatgccgcgc
gaccggaaccggttgcgccgccgcatcgacggcgcgcgcaaggcccgtgacgccgagtcc
gtcctcgcgcagatcacccgcgacgtcgaagcggccgagcagcgggtcgagctgcggcgc
gcgagcgttccgcgggtcgagtacccggaagaactgcccgtcagcaagcgcaaggacgac
atcgcggccgcgatccgcgagcaccaggtggtgatcgtcgcgggggagaccgggtcgggg
aagaccacgcagctgccaaagatctgcctggagctggggcggggtgtgctcggccagatc
gggcacacccagccgcggcggctcgcggcgcgcacggtcgcggaccggatcgcgggcgag
ctgggcaccgagcccggcgccaccgtgggctacaaggtgcggttcaccgatcattccggt
gacgacacgctggtcaagctaatgaccgacggcatcctgctggccgagatccagaccgac
cggatgctgcgccgctacgacaccctgatcatcgacgaggcgcacgagcgcagcctcaac
atcgatttcatcctcggctacctcaagcagctgctgccgcgccgccccgagctgaaggtg
atcatcacctcggcgacgatcgacccggagcggttttcgcggcatttcgacgacgcgccg
atcgtcgaggtctccgggcggacctacccggtcgaggtgcggtaccggccggtggtggac
ccggacgaccccgatcccgacaccgaccgcgaccagacccaggccattctcgacgccgtg
gacgagctttccgccgaggggcccggcgacatactggtgttcctctccggtgagcgcgag
atccgcgacaccgcggacgcactgtccaaacgggacctccgcaacaccgagatcctcccg
ctgtacgcgcggctttcggcggccgaccagcatcgggtgtttcagcggcacaccgggcgc
cgcgtcgtgctggccacgaacgtcgcggagacctcgctcacggtgcccgggatcaagtac
gtgatcgaccccggcacggcgaggatctcccgctacagccaccggacgaaggtccagcgg
ctgccgatcgaaccggtctcgcaggcgtcggccaaccagcggaagggccgctgcggccgt
acttcggacggtatctgcatccggctgtacacagaggacgatttcgacgcgcgccccgag
ttcaccgatcccgagatcctgcgcaccaacctcgcgtcggtgatcctgcagatgacctcg
ctcgggctcggggacatcgcggccttcccgttcgtcgaaccgccggatcgccgccaggtc
accgacggcgtgcacctgctcaccgaactgggcgcgctcgacccttcgataaccgatgtc
cacaagcgactgacgacggtcggccgcaagctcgcacagcttcccgtcgacccgaggatg
ggccgcatggtgctggaggccgcggcgaacgggtgcgtgcgcgaggtgatgatcatcgcc
gccgcgctgtccatccaggacccgcgcgagcggccagccgagcaccagcaggcggcgggg
gagaagcacgcgcgcttcgcggacaagacctcggacttcctcgcctacctcaacctgtgg
gagtacctgcgcgagcagcagaaggcgttgtccgccaaccagttccgcaagctgtgccgc
gcggagttcctgaactacctgcgggtgcgcgaatggcaggacatcttcagccagctccgc
cagctcgccaagcagctcgacatcacgctcaacaccgaaccggccgatccgcagcacgtc
cacacggcactcatctccggcctgctctcgcacatcgggctcaaggaccccgccaccggt
gagtacctcggcgcgcgcggcgcgaagttctcggtgttccccggttcggcgctgttcaag
aagcagccgcgctgggtgatgtccgccgaactggtggaaacctcgcgactgtggggacgc
gtcaacgcgcgcatcgagccggaatgggtcgagccgctcgcgcagcacgtcgtcaagcgc
agctactccgaaccgcactgggaacgccgccagggcgcggtgatggcgatggagaaggtg
accctctacggcgtgccgctcgtcgcgggccgccgggtcaactacggccgcatcgacccc
gagctgtcgcgggagctgttcatccggcacgccctcgtggagggcgactggcagacgaac
caccggttcttcaaggagaaccgcgcgctgctcgacgaggtcgaggatctcgaaaaccgc
gcgcgccgccgcgacatcctggtcgacgacgagacgctgttcgagttctacgaccagcgc
gtcggcgaggacgcggtgtcgtcccggcacttcgacagctggtggaagaagacccggcgc
accgaaccggacctgctgagcttcgagaagacgatgctcatcaacgccaccgcgggagac
gtcagcgagcaggactaccccgacacctgggcgcagggcgcgctgcggttcggactgacc
taccagttcgaacccggtgccgacgcggacggcgtcaccgtgcacatcccgctgccggtg
ctcaaccaggtgcgcgcggacgggttcgactggcaggtgcccggcttgcgcgaggaactc
ctcaccgcgctcatcaagtcgttgccgaaacaggtgcggcgcaacttcgtcccggcaccg
gaccacgcgaaactggtgctggcgcgggcgaatcccgacgacggcgcggtgaccgacgtc
gcggcgcgcgagctggaggacttccgcggcgtgccgatcccgcccgaggcgtggcagccg
gagctggtgccggagcatctcaaggtgacgttccgggtcaccgacgacaagggccgcaaa
ctcgccgagggcaaggatctcgaagcgctcaagcggaagctgagcggtgaggtccgcgcg
accatttcgaccgcggcgaacagcatcgagcgggccgggttgacctcgggcgcgttcggc
gagctgccgaaggtgttcgagagcacccagcgcgggcacgcggtgaaggcgtacccggcg
ctggtcgacgagggcgagacggtcgccgtccgcatgctcgacaccccggcgcagcaggag
cacgcgatgtggctcggcacgcgcaggctgctgcgcctcgcggtgccgtcgccgatgaag
ttcatcacgcgcagcctcggcaaccaggcgaagctcgtgctgaaccgcaacccgcacggc
agcgtgcccgcactgctcgaagactgcatctcgtgcgcgatcgacaagctcgtcgccgac
aacggcggcccggtgtgggacgaggcgggcttcggcgcgctggccgagaaggtccgcacc
ggactgaactccaccgtcctttccgtactgtccgaagtggagcggatcctgcgcgcggcg
aacgacgccgagaccgcgctcgcggacgcgaaaggccctgcggagtccttgcacgacatt
cgcgctcagttggacggcttggtgtacaagggtttcgtgacgcggacgggtttcgaccgc
ttgtccaatgtggtcaggtacctgcgcgggatcgaacggcggatcgacaagctccgcacc
gatccggcaagggacatcgagcggctgcgcgaggtcgcctgggtgaccgaggagtaccag
cggctgctggacgcggtgccaccgggaacctcgccgtcgcccgcgctgcgcgacgtgcgg
tggatgatcgaggaactgcgggtgagcttcttcgcccagacgctcggcacggcgcacccg
gtgtcggtcaaacgcgtgctgcgggcgatggacgcggcctag
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