Amycolatopsis sp. CA-230715: HUW46_01842
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Entry
HUW46_01842 CDS
T10444
Symbol
rho_1
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amyz Amycolatopsis sp. CA-230715
Pathway
amyz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUW46_01842 (rho_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyz03021
]
HUW46_01842 (rho_1)
03019 Messenger RNA biogenesis [BR:
amyz03019
]
HUW46_01842 (rho_1)
Transcription machinery [BR:
amyz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HUW46_01842 (rho_1)
Messenger RNA biogenesis [BR:
amyz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HUW46_01842 (rho_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
Spore_III_AA
DUF2863
AAA
Motif
Other DBs
NCBI-ProteinID:
QWF78446
LinkDB
All DBs
Position
1940716..1941843
Genome browser
AA seq
375 aa
AA seq
DB search
MPETLVPEPIRGILDIGDKAGFVRGGGYLPSADDAHVPLAVIRKHGLRHGDLVLGAKRPA
QQQKAGTLTDIVSVNGIEPEEARHRPEFEKLTPVHPHERLLLETTPTAIATRVIDLVMPV
GKGQRALITSPPKAGKTSVLQAIANAIAVNHPRAQLMVVLVDERPEEVTDMARSVRGEVI
SSTFDRPPHEHLAVAELAVARARRRAELGQDVVLLFDSLTRLGRAYNLATKASGRILSGG
IDAATLHPLKRFLGSARAFEEGGSLTIVATAMVENGSLGDTVLFEELKSTGNAELKLDRR
TAERRVFPAIDIPQSSTRREELLLTPEELAITHELRRALATDPQHAIDHLLDQLRKTRSN
AEFLMRFAGARVAAA
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaacccttgtccccgaaccgatccggggaatactcgacatcggcgacaaagcc
gggttcgtccgaggaggcggctatctgccgagcgccgacgacgcacacgtccccctcgcc
gtgatccgcaagcacggcctccgccacggcgatctcgtgctcggcgcgaaacgccccgca
cagcagcaaaaagcgggcacgctcaccgatatcgtgagcgtgaacggaatcgagcccgaa
gaagcgcggcaccgccccgaattcgagaagctcaccccggtgcacccgcacgaacgactg
ctgctcgaaaccacgccgaccgcgatcgccaccagggtcatcgatctcgtcatgcccgtc
ggcaagggccagcgcgcgctcatcacgtcaccgccgaaagcggggaaaacctcggtgctg
caagcgatcgcgaacgcgatcgcggtcaaccacccgcgtgcccagctgatggtggtcctc
gtcgacgaacggccggaagaggttaccgacatggcgcgctcggtccgcggcgaggtcatt
tcgtccacattcgaccgtccgccgcacgagcacctcgcggtggccgaactcgccgtcgca
cgggcacgccgccgcgccgaactcggccaggacgtggtgctcctgttcgactcgctcacc
cgcctcggccgcgcctacaacctcgcgaccaaggcgtcggggcggatcctgtccggcggt
atcgacgccgccaccctgcaccccctcaagcgattcctcggctccgcccgcgcgttcgag
gagggcggctcgctgacgatcgtcgccaccgccatggtggagaacggttccctcggcgac
acggtcctcttcgaggagctcaagagcaccggcaacgccgagctcaaactggaccggcgc
accgcggagcgccgcgtgttccccgcgatcgacatcccgcagtcgagcacgcgccgcgag
gagctgctgctcacccccgaagagctcgccatcacccacgaactccgccgcgcgctcgcc
accgacccccagcacgccatcgaccacctgctcgaccagctccgcaagaccaggtcgaac
gccgagttcctgatgcgcttcgcgggcgcgcgcgtcgccgcggcctga
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