Amycolatopsis sp. CA-230715: HUW46_05288
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Entry
HUW46_05288 CDS
T10444
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
Organism
amyz Amycolatopsis sp. CA-230715
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DUF3670
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QWF81855
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Position
5554426..5557431
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AA seq
1001 aa
AA seq
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MLVLHAFWAVDGGLCLWAEDSEYPVTSRSRAARSARPHPFAVPAAELAGMISGKVDEFTL
LLPSSRTSPLDSPELIRIAPRPPARSEPVLSPWTVPVVVLDAAAAATALTVRTVMRHSAS
WAYFAELAAFARGLVARGRVLPALELDDLGATAKWRPVLQGRDVLTAQEFAAAMPPVCRA
ASGAEPHELVTAALQALADAVVREALLPELAPPRRGRRPQRVPAAEAWLTALSAPDGRFD
ADDVGSLAEALRPWDEIGAERTGPARATFRLTEVPSEDDSPPGWRLEFLLQSAEDPSLLV
PAGHAWDDEGALRRWLARPQELLLAELGRASRVYPQLAPGLRQARPCALDLDADGAYHFL
SVAAPRLDEAGFGVLLPSWWNRRRELALTASAHTPVAGVVQKASKFGEKQLVEFRWQLAV
GDDEALTDEEIASLAGTKAPLIRLRGQWVTVDPEQLRRGLEFLKRKPKPKMTAAEVLALA
ASHPDDLDIPLPVADVRADGWLGDLLDGTAEKSLSAVPTPDDFTATLRPYQQRGLSWLAF
LSSLGLGACLADDMGLGKTVQLLALEAAHRAEEPDAGPTLLICPMSLVGNWQREAAKFAP
GLRVYAHHGSGRPHGDELADQLDATDLVVTTYATATRDIEELADREWRRVVLDEAQAIKN
SASRSSKAVRRLRAGHRVALTGTPMENRLAELWSVMDFANPGMLGSPELFRTRYAVPVER
HGRTEPVERLRKITKPYLLRRLKTDPAIIDDLPEKIEVKQYCRLTTEQASLYQSVVDDMM
DKIENSEGIERRGNVLAAMTKLKQVCNHPAQLLHDRSLIGRRSGKVIRLEEILDEIIAEG
DKVLCFTQFTEFAELLLPHLSARFGTDIAYLHGGTSKKRRDDLVTAFSADDGPPIFLLSL
KAGGTGLNLTAANHVIHLDRWWNPAVENQATDRAFRIGQQRTVQVRKFVCTGTLEEKIDD
MIEEKKALADLVISDGESWLTELSTSDLRAVFDLTDGAVDD
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtcctgcacgcgttctgggcggtcgacggcggtttgtgcctgtgggccgaggat
tccgagtacccggtgacgagccggagccgggccgcgcgctcggcgcggccgcacccgttc
gccgtacccgcggccgaactcgccggaatgatctcgggcaaggtggacgagttcaccctg
ctgctgccgtcgtcgcggacttccccgctcgattcgccggaactgatccggatcgcgccg
cgtccacccgcgcggtcggaacccgtgttgtcgccgtggaccgttcccgtcgtcgtgctc
gacgccgcggcggccgcgacagcgttgaccgtgcgcaccgtcatgcggcacagcgcgtcc
tgggcctacttcgcggaactcgccgcgttcgcgcgcgggctcgtcgctcgcggccgtgta
ctgcccgcgctcgaactcgacgatctcggtgccaccgcgaagtggcgtccggtgctgcag
ggccgcgacgtcctcaccgcgcaggagttcgccgccgcgatgcccccggtgtgccgggcc
gcgtccggcgccgagccgcacgagctggtcaccgctgccctgcaggcgttggccgatgcg
gtggtcagggaagctcttctgccggagctggctccgccgcgccgcggccgccgtccccag
cgggtgcccgcggccgaggcgtggctgaccgcgttgtccgccccggacggccgattcgac
gccgatgatgtcggttccctcgccgaggcgctgcggccgtgggatgagatcggcgccgag
cggaccggaccggcgcgcgcgacgttccgcctcacggaagtcccgtccgaagacgactcc
ccgcccggctggcggctggagttcctgctgcagtccgcggaggatccgagcctgctggtc
ccggccggacacgcgtgggacgacgagggcgccctccgccgatggctcgctcgtccgcag
gaactgctgctcgcggagctgggccgggcgagccgcgtctacccgcagcttgcgccggga
cttcgccaagcgcgcccgtgtgcactcgacctggacgccgacggcgcctaccacttcctt
tcggtggcagcgccccggctggacgaagcgggtttcggcgtcctgctgccgtcctggtgg
aaccgtcgccgcgaactggcgctcaccgcgtccgcgcacacaccggtcgcgggtgtggtg
cagaaggcgagcaagttcggggagaagcagctcgtggagttccgctggcagttggccgtc
ggcgacgacgaggcgctcaccgacgaggagatcgcctcgctcgcgggcaccaaggcgccg
ctgatccggttgcgcgggcagtgggtgaccgtcgatcccgagcagctccggcgcggcctc
gaattcctgaagcgcaaaccgaagccgaagatgaccgccgccgaagtgctggcactcgcc
gcgagtcaccccgacgacctcgacatcccgctcccagtggcggacgtgcgtgccgacggc
tggctcggcgacctcctcgacggcaccgccgaaaaatccttgagcgcggtgccgaccccc
gacgacttcacggcgaccttgcgtccataccagcagcgcgggttgtcctggctggctttc
ctgtcctcgctcggcctcggcgcctgcctcgcggacgacatggggctcggcaagaccgtg
cagttgctcgcgctggaagcggcgcaccgcgcggaggagccggatgccgggcccacgctg
ttgatctgcccgatgtccctggtggggaactggcagcgggaagccgcgaagttcgcgcca
ggcctgcgggtctacgcgcaccacggcagcgggcgcccgcacggcgacgaactggcggac
cagctggacgccacggacctggtggtcaccacctacgccacggccacccgtgacatcgag
gaactggcggaccgcgaatggcgccgcgtggtcctcgacgaggcgcaggcgatcaagaac
agcgcctcgcgttcgtcgaaggcggtgcggcggctgcgcgcggggcatcgcgtcgcgttg
accggcacgccgatggaaaaccggctggccgagctgtggtccgtgatggacttcgccaac
ccgggcatgctcggctcacccgagctgttccgcacgcgctacgccgtgccggtcgagcgg
cacggccggaccgagccggtcgaacgcctgcggaagatcaccaagccgtacctgttgcgg
cgcttgaaaaccgatcccgcgatcatcgacgacctgccggagaagatcgaggtcaagcag
tactgccgcctcaccaccgagcaggcctcgctctatcagtccgttgtggacgacatgatg
gacaagatcgagaactccgaagggatcgaacgccgcggcaatgtgctcgccgcgatgacc
aagctgaaacaggtctgcaaccaccccgcgcagctgttgcacgaccgctcgctgatcggc
aggcgctcggggaaggtgatccggctggaggagatcctcgacgagatcatcgccgagggc
gacaaggtgctctgcttcacccagttcaccgagtttgccgaactgctgctgccgcatctg
tccgcgcgcttcggcaccgatatcgcctacctgcacggcggcacctcgaagaagcgccgc
gacgacctggtcaccgccttctccgcggacgacggcccgccgatcttcctgctgtccctg
aaagcgggcggcaccggcctgaacctcaccgccgcgaaccacgtgatccacctcgaccgc
tggtggaaccccgccgtggaaaaccaagccaccgaccgtgccttccggatcggccagcaa
cgcaccgtgcaggtccgcaagttcgtctgcaccggcaccctcgaagaaaagatcgacgac
atgatcgaggagaagaaggccctagccgacctcgtcatctccgacggcgaaagctggctg
accgaactgtccacatcagacctccgagccgtcttcgacctcaccgacggagccgtcgat
gactag
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