Amycolatopsis sp. CA-230715: HUW46_05417
Help
Entry
HUW46_05417 CDS
T10444
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amyz Amycolatopsis sp. CA-230715
Pathway
amyz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HUW46_05417 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyz03400
]
HUW46_05417 (mfd)
Enzymes [BR:
amyz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HUW46_05417 (mfd)
DNA repair and recombination proteins [BR:
amyz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HUW46_05417 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QWF81981
LinkDB
All DBs
Position
5685121..5688693
Genome browser
AA seq
1190 aa
AA seq
DB search
MTSAPLSGLLYTVLPEPSLRGILERAGAPLLEIEGPVAARQLVVAALAADKAGEQGRPVL
AVTATGREADELTAALSALLGADQVVDFPSWETLPHERLSPRADTVGRRLEVLHSLRSAA
PPRVVVSTVRSLIQPMAPGLGSLAPIDLKVGEEQEFEGVLERLVELAYTRVDMVEKRGEF
AVRGGILDVFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEISEVSAPPCRELLLTA
DVKARAAELAEAHAADAQLAEMLTKLADGIPCEGMEALIPVLCEGELELLTDAMPEGAHV
LLADPEKIRARAHDLVRTGQEFLEASWTTAAGGGQAPIDLGASAYRDLASVAKHAGETKR
AWWTISQLTTDAEDVCRVKVEAVPGYRGELERATTDLRAHTASGGAAVLVVAGHGTAARA
VEQLSGAEVPATLAGDGLTGAPAPGVVTVTCGALSDGFVAPELALVVLSESDLTGRGAST
GQSTKDLNTKMPSRRRNAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEY
ASSKRGHPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKAKKAVKEIAAELV
QLYAARQAAPGHAFGADTPWQNELEDAFPFTETNDQLAAIEEVKTDMQRGVPMDRVICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFTERMQSFPVTIKGLSRFTDK
SEVDGVLEGLAGGDVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHV
DVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAVRRELLRD
GQVFYVHNRVSSIEKAAKRIRELVPEARVVTAHGQMNEEKLEKIIQGFWEREFDVLVCTT
IVETGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPSEAPLTETAHDR
LATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDVFRRS
AGAEPIEDEAPAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAPDAEGLAAVREELVD
RYGEPPAAVRRLLSVAAFRHVCRAAGVTEVSTQGNTIRFAPLPLADSQMVRLKRLYPKAM
YKAVTNTVSVPKPTEGPAGGRMGAPALRDEPLLDWCAKVLTQLTKTPTPV
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgacaagcgctccattgtccggtctcctgtacacagtgctgcccgaaccctccctgcgc
gggattctggaacgggcaggcgcccccctactagagatcgagggccccgtcgcggcccgt
cagctcgtcgtggccgcgctggccgcagacaaagcaggcgaacagggcaggccggtcctc
gccgtcaccgccacgggcagagaggccgacgagctgaccgcggcgctgtccgccctgctc
ggcgccgatcaggtggtcgacttcccgtcctgggaaacgctgccccacgagcgcctgtcc
ccgcgcgcggacaccgtcggcaggcgcctggaagtgctgcacagcctgcggagcgccgcg
ccgccccgcgtcgtcgtctcgaccgtccgcagcctcatccagccgatggcgccgggcctg
ggctcgctcgcgccgatcgacctgaaggtcggcgaggagcaggagttcgagggcgtgctg
gagcgcctggtcgagctggcctacacccgcgtcgacatggtcgagaagcgcggcgagttc
gcggtccgcggcggcatcctcgacgtgttcggcccgaccgcgcagcacccggtccgggtc
gagttctggggcgacgaggtcagcgagatccgcgccttcgcggtgtccgaccagcgctcg
ctgccgggcgagatctccgaggtcagcgcgccgccgtgccgcgagctgctactcaccgcc
gacgtgaaggcccgcgccgccgagctggccgaggcgcacgcggcggacgcccagctcgcc
gagatgctcaccaagctcgccgacggcatcccgtgcgagggcatggaggcgctcatcccg
gtgctgtgcgagggcgagctggagctgctcaccgacgccatgcccgagggcgcgcacgtg
ctgctcgccgatcccgagaagatccgcgcccgcgcgcacgacctggtgcgcaccggccag
gagttcctcgaagcttcgtggaccacggccgcgggcggcgggcaggcgcccatcgatctc
ggcgcttcggcgtaccgggatctcgccagcgtcgcgaagcacgcgggggagaccaaacgc
gcctggtggacgatctcgcagctcaccaccgacgccgaggacgtgtgccgggtcaaggtg
gaggccgtgcccggctaccggggcgagctggagcgcgccaccacggacctgcgcgcgcac
accgcctccggtggcgccgccgtgctcgtggtcgcgggccacggcaccgccgcccgcgcg
gtggaacagctttccggcgcggaggtgcccgcgacactcgccggtgacgggctcaccggg
gcacccgcgcccggggtcgtcacggtcacctgcggcgcgctgtccgacgggttcgtcgcg
ccggagctggcgctggtggtgctcagcgaatcggacctcaccggccgcggcgccagcacc
gggcagtccacaaaggacctgaacaccaagatgccgtcgcgccgccgcaacgcggtggac
ccgctcgccctcaaggctggcgactacgtggtgcacgaccagcacggcatcggccggttc
gtggaaatggtgcagcgcacggtcgccggcgccacgcgcgagtacctgctgctcgaatac
gcctcgtccaagcgcggccaccccggcgaccggctcttcgtgccgacagaccagctcgac
gaggtttcccggtacgtcggcggcgaactgcccacgctcaacaagctcggcggctcggac
tggaagaacaccaaggccaaggcgaagaaggcggtcaaggagatcgccgcggagctggtg
cagctctacgccgcccggcaggccgcgccgggccacgcgttcggcgcggacacgccgtgg
cagaacgagctggaagacgccttcccgttcaccgagaccaacgatcagctcgccgcgatc
gaagaggtcaaaaccgatatgcagcgcggtgtcccgatggacagggtcatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggc
aagcaggtcgccgtgctggtgccgaccacgctgctcgcccagcagcacctgagcaccttc
accgagcgcatgcagtccttcccggtcaccatcaagggcctgtcccggttcaccgacaag
tccgaagtggacggtgtgctggagggcctcgcgggcggcgacgtcgacatcgtgatcggc
acgcaccgcttgctgcagaccggaatccgctacaaggacctcgggctcgtgatcgtcgac
gaggagcagcgcttcggcgtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtc
gacgtgctgaccatgtccgcgaccccgatcccgcggacgctggagatgtcgctcgcgggc
atccgcgagatgtccacgatcctcacaccgccggaggacaggcacccgatcctgacctac
gtcggcggctacgacgacaagcaggtcggcgccgcggtgcgccgcgagctgctgcgcgac
ggccaggttttctacgtgcacaacagggtttcctcgatcgagaaggccgcgaagcgcatc
cgcgagctggtgccggaggcgcgcgtggtcaccgcgcacggccagatgaacgaggagaag
ctcgaaaagatcatccagggcttctgggagcgcgagttcgacgtgctcgtgtgcaccacg
atcgtcgagaccgggctcgacatctccaacgcgaacacgttgatcgtcgagcgcggcgat
ctgctcggcctcgcgcagctgcaccagcttcgcggccgcgtcggccgcgggcgggagcgc
ggctacgcgtacttcctgtacccgtcggaggcgccgctcaccgagaccgcgcacgacagg
ctcgccacgatcgcgcagaacaccgaactcggcgcgggcatggccgtggcgatgaaggac
ctggagatccgcggcgcgggcaacatcctcggcgccgagcagtccgggcacatcgcgggc
gtcggcttcgacctgtacgtgcggctcgtcggcgaggcggtggacgtgttccgccgcagc
gcgggcgcggagccgatcgaggacgaagcccccgccgaggtgcgcgtggacctccccgtc
gacgcgcacatcccgcacgactacgtgcccggcgaacggcttcgccttgaggcgtaccgg
aaaatcgccgccgcaccggatgccgagggcttggcggccgtccgcgaagagctggttgac
cgctacggcgaaccgccagccgcggtgcgcaggctgctgtcggtcgccgcgttccggcac
gtgtgccgcgcggccggggtcaccgaggtttccacgcagggcaacacgatccgcttcgcc
ccgctgccgctggccgattcgcagatggtgcggctgaagcgcttgtacccgaaggcgatg
tacaaggccgtgacgaacacggtctcggtgccgaagccgacggaaggccccgcgggcggc
cggatgggcgcgccagcactccgcgacgagcccctgctggactggtgcgcgaaagtcctg
acacagctcacgaaaacccccaccccggtgtag
DBGET
integrated database retrieval system
