Amycolatopsis sp. CA-230715: HUW46_09306
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Entry
HUW46_09306 CDS
T10444
Symbol
ligD_8
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amyz Amycolatopsis sp. CA-230715
Pathway
amyz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUW46_09306 (ligD_8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyz03400
]
HUW46_09306 (ligD_8)
Enzymes [BR:
amyz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUW46_09306 (ligD_8)
DNA repair and recombination proteins [BR:
amyz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUW46_09306 (ligD_8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QWF85826
UniProt:
A0A975RKD8
LinkDB
All DBs
Position
complement(10094044..10096053)
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AA seq
669 aa
AA seq
DB search
MVRTERSTAVPAWVDPMLAKSDGGQLPARPGLVYEPKYDGYRCCYRVAPDGGSVLLTSRN
NQDMTAEFAELTGVFGDVLGGEALVLDGEVVVYDELGRPDFELLQQRRGAFQQHPRADRV
PARFLAFDLLQLGDRMLLDQPYELRRRLLSGLPMPDPYKSAVVPAFTFEELAADRQTPES
LLARVAGEGMEGVVAKVATAVYRAGRRSDAWLKHPITNTAEVVVCGYREGQGSLAGTVGG
LLLGAHDPDTGDLEYLGDVGTGFSQAARAALRRRLETLERPTHPFATTPPREDTRRARWL
DPVLVGEVTYRRFTEGAGRLRHTAWRGLREDKKPIDVFAPRPLHRTKTAPSTTATPASGP
VSAAGQLVQVEDRQLTLSNLDKVLYPRTGFTKREVILYYSLIAPVLLPQLARRPVTFLRF
PDGVDGEQWFAKNVPSGAPPWLNTAQLPSRGTRGHRDLIEYPLLDDLPALVWAANLAALE
LHTPQWTIRDDGQRRPPDQLVFDLDPGPGVTIVECCAVAERLHEILTADGLTAFPKTSGS
KGMQLLCPIETDQPDAPSAYAKRLAQQLAAETPDEVTAVMAKARRGGRVLVDWSQNNPAK
TTITAYSLRGRDEPTVSTPITWDEVAACRDGQHLGFTSDEVLARVEAMGDLLAEMPAHRS
PLPGDVHDA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgcaccgagcgttcgaccgcggtcccggcgtgggtagacccaatgctggccaag
tccgacggtggccagctgccagccaggcccggcctggtctacgagccgaagtacgacggg
tatcgatgctgctaccgcgtggcgccagatggtggttccgtacttctcaccagccggaac
aaccaggacatgaccgccgagtttgcggaactgaccggggtcttcggcgatgtgctgggc
ggagaagccctggtgctcgatggcgaggtcgtcgtctacgacgaactcggtcgccccgat
ttcgagttactgcagcagcggcgcggcgcatttcagcagcacccgcgcgctgatcgcgtt
ccggcacgatttctcgcgttcgacctgctgcaactcggggaccggatgttgctggaccag
ccctatgagctgcggcgacggttgctgagcgggctaccgatgcccgacccgtacaagagc
gccgtggttccggcgttcaccttcgaagaactcgcggcggaccgtcaaaccccggaaagc
ctgctcgcacgggtggccggcgagggcatggaaggcgtggtcgccaaggtggcgaccgcg
gtgtaccgggcaggacgacgcagcgacgcgtggctgaaacacccgatcaccaacaccgcc
gaggtggtcgtgtgcggctaccgcgagggccagggcagcctcgccggaacggtcggcgga
ctgttgctcggcgcgcacgaccccgataccggcgatctcgagtacctcggcgacgtgggc
acgggattcagtcaggccgcgagggcggcgttgcgacgacggttggagacgctggagcga
ccgacccaccctttcgccacgacgccaccgcgagaagacacacggcgagcacgctggctt
gacccggtcctggtcggcgaggtgacctaccgccggttcaccgagggcgcgggacggctg
cggcacaccgcgtggcgaggcctgcgcgaggacaagaagcccatcgacgtcttcgcgccg
agacctctgcatcggaccaagacggcgccgtcgaccacggccactccggcatccgggcca
gtgtccgccgcagggcaactcgtgcaggtcgaagacaggcaacttactttgtctaatttg
gacaaagtcttgtatccgcgtacgggcttcacgaagcgcgaggtgatcctctactactct
ttgatcgcacccgtcctgctgccgcagctggcccggcggccggtgacgttcctccggttc
cccgacggcgtggacggcgagcagtggttcgccaagaacgtcccctccggtgcaccgccc
tggctgaacacggcacagctacccagccggggaacccgtggacaccgggacctgatcgag
tatccattgctcgacgacctgcccgcactggtgtgggcagcgaacctcgccgcgcttgaa
ctccacactccacaatggacgatccgtgacgacggtcagcgtcggcccccggaccaactc
gtgttcgacttggaccccggtcctggcgtcaccatcgtcgagtgctgcgcggtcgccgag
cggctccacgagatcctcaccgcggatggcctcaccgctttcccgaagacatccgggtcg
aaggggatgcagctgctgtgtccgatcgagacggatcagcccgacgccccctcggcctac
gccaagcgcctggcacaacagctcgcggcggaaaccccggacgaggtgaccgcggtgatg
gcgaaggcacgccggggcgggcgggtgttagtcgattggtcgcagaacaacccggccaag
acgacgatcacggcctactccttacgtggccgcgacgagccaactgtctcaacgccgatc
acctgggacgaagtcgcggcgtgccgagacgggcagcaccttgggttcacatccgacgag
gttctggcgcgtgtcgaggccatgggcgatctcctggccgagatgcccgcccaccgatcg
ccactacccggcgatgtgcacgatgcctga
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