Amycolatopsis mediterranei RB: B737_0618
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Entry
B737_0618 CDS
T02804
Symbol
rifC
Name
(GenBank) rifamycin polyketide synthase
KO
K15672
rifamycin polyketide synthase modules 7 and 8
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz01051
Biosynthesis of ansamycins
amz01052
Type I polyketide structures
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
01052 Type I polyketide structures
B737_0618 (rifC)
01051 Biosynthesis of ansamycins
B737_0618 (rifC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01008 Polyketide biosynthesis proteins [BR:
amz01008
]
B737_0618 (rifC)
Polyketide biosynthesis proteins [BR:
amz01008
]
Polyketide synthase (PKS)
Modular type I PKS
cis-AT PKS
Rifamycin PKS
B737_0618 (rifC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ketoacyl-synt
Acyl_transf_1
KR
Ketoacyl-synt_C
PKS_DH_N
PS-DH
SpnB_Rossmann
PP-binding
KAsynt_C_assoc
Thiolase_N
Sacchrp_dh_NADP
Docking
Epimerase
RhiE-like_linker
adh_short
ACP_syn_III
RmlD_sub_bind
Polysacc_synt_2
CurL-like_PKS_C
GDP_Man_Dehyd
Motif
Other DBs
NCBI-ProteinID:
AGT81282
LinkDB
All DBs
Position
667514..672805
Genome browser
AA seq
1763 aa
AA seq
DB search
MVSASYEKVVEALRKSLEEVGTLKKRNRQLADAAGEPIAIVGMACRLPGGVTGPGDLWRL
VAEGGDAVSGFPTDRCWDLDTLFDPDPDHAGTSYTDQGGFLHDAALFDPGFFGISPREAL
AMDPQQRLLLEASWEALEGVGLDPASLQGTDVGVFTGAGGSGYGGGLTGPEMQSFAGTGL
ASSVASGRVSYVFGFEGPAVTIDTACSSSLVAMHLAAQALRQGDCSMALAGGAMVMSGPD
SFVVFSRQRGLATDGRCKAFASGADGMVLAEGISVVVLERLSVARERGHRVLAVLRGSAV
NQDGASNGLTAPNGPSQQRVIRAALANAGIGPSDVDLVEAHGTGTSLGDPIEAQALLATY
GQDRETPLWLGSLKSNIGHTQAAAGVASVIKVVQALRHGVMPPTLHVDEPSSQVDWSEGA
VELLTGSRDWPRGDRPRRAGVSSFGVSGTNVHLIIEEAPEEPAAAVPTSADVVPLVVSAR
STGSLAGQADRLTEVDVPLGHLAGALVAGRAVLEERAVVVAGSAEEARAGLGALARGEAA
PGVVTGTAGKPGKVVWVFPGQGTQWVGMGRELLDASPVFAERIKECAAALDQWTDWSLLD
VLRGDGDLDSVEVLQPACFAVMVGLAAVWESAGVRPDAVVGHSQGEIAAACVSGALTLDD
AAKVVALRSQAIAARLSGRGGMASVALSEDEANARLGLWDGRIEVAAVNGPASVVIAGDA
QALDEALEVLAGDGVRVRQVAVDYASHTRHVEDIRDTLAETLAGITAQAPDVPFRSTVTG
GWVRDADVLDGGYWYRNLRNQVRFGPAVAELLEQGHGVFVEVSAHPVLVQPISELTDAVV
TGTLRRDDGGLRRLLTSMAELFVRGVRVDWATLVPPARVDLPTYAFDHQHFWLRPAAQAD
AVSLGQAAAEHPLLGAVVRLPQSDGLVFTSRLSLRTHPWLADHTIGGVVLFPGTGLVELA
VRAGDEAGCPVLDELVTEAPLVVPGQGGVNVQVTVSGPDQNGLRTVDIHSQRDDVWTRHA
TGTVSATPASSPGFDFTAWPPPDGQRVEIGDFYADLAERGYAYGPLFQGVRAVWQRGEDV
FAEVALPEDRREDAARFGLHPALLDAALQTGTIAAAASGQPGKSVMPFSWNRLALHAVGA
AGLRVRVAPGGPDALTVEAADETGAPVLTMDSLILREVALDQLDTARAGSLYRVDWTPLP
TVDSAVPAGRAEVLEAFGEEPLDLTGRVLAALQAWLSDAAEEARLVVVTRGAVPAGDGVV
SDPAGAAVWGLVRAAQAENPDRFVLLDTDGEVPLEAVLATGEPQLALRGTTFSVPRLARV
TEPAEAPLTFRPDGTVLVSGAGTLGALAARDLVTRHGVRRLVLASRRGRAAEGIDDLVAE
LTGHGAEVTVAACDVSDRDQVAALLKEHALTAVVHTAGVFDAGVTGALTRERLAKVFAPK
VDAANHLDELTRDLDLDAFIVYSSASSIFMGAGSGGYAAANAYLDGLMAARRAAGLPGLS
LAWGPWEQLTGMADTIDDLTLARMSRREGRGGVRALGSADGMELFDAALAAGQALLVPIE
LDLREVRADAAGGGTVPHLLRGLVRAGRQAARTAATEDGGLERRLAGLTVAEQEALLLDL
VRGQVAVVLGHADSSGVRADAAFKDAGFDSLTSVELRNRLRETTGLKLPATLVFDHPNPL
ALARHLRAELAVDEASPADAVLAGLAGLEAAIAAAGAPDGDRITARLRELLKAAEAAEAR
PGTSGDLDTASDEELFALVDGLD
NT seq
5292 nt
NT seq
+upstream
nt +downstream
nt
gtggtgagtgcgtcgtatgaaaaggtcgtcgaggcgctgcggaagtcgctcgaagaggtc
ggcacgctgaagaagcggaaccggcagctcgccgacgcggccggcgagccgatcgccatc
gtcggcatggcctgccggctgcccggtggcgtcaccgggcccggtgacctctggcggctg
gtggccgagggcggcgacgccgtctcggggttccccaccgaccgctgctgggacctggac
accctgttcgacccggatcccgaccacgcggggacgtcgtacaccgaccagggcggcttc
ctccacgacgcggccctgttcgacccgggcttcttcgggatttcgccgcgcgaggcgctg
gccatggacccgcagcagcggttgctgctggaggcgtcctgggaggcgctggaaggtgtc
ggcctcgacccggcttcgttgcagggcaccgacgtcggcgtgttcaccggcgcgggcggg
tcgggctacggcggcggcctcaccgggccggagatgcagagtttcgcgggcaccgggctg
gcctcgagcgtggcttcgggccgggtgtcctacgtcttcgggttcgagggaccggcggtc
acgatcgacacggcgtgctcgtcgtcgctggtggcgatgcacctcgccgcgcaggccctg
cgccaaggcgactgctcgatggcactggccggcggcgcgatggtgatgtcgggccccgac
tccttcgtcgtcttctcccggcagcgggggctggccaccgacgggcggtgcaaggcgttc
gcgtcgggcgccgacggcatggtgctcgccgagggcatcagcgtggtcgtgctggagcgg
ctttcggtcgcgcgggaacgcgggcaccgggtgctggccgtgctgcgcggcagcgcggtg
aaccaggatggcgcgtcgaacggcctgaccgccccgaacggcccttcccagcagcgcgtg
atccgcgccgcgctggccaacgccggaatcggaccgtccgatgtggacctcgtcgaggcg
cacgggaccgggacgagcctgggtgatcccatcgaggcgcaggccttgctggcgacctac
ggccaggaccgggagacgccgttgtggctcggctcgctgaagtcgaacatcgggcacacg
caggcggccgcgggcgtggcgagcgtgatcaaggtcgtgcaggcgctgcggcacggcgtc
atgccgccgaccctgcacgtcgacgagcccagctcgcaggtcgactggtccgaaggcgcg
gtggaactgctgaccgggagccgggactggccgcgcggggaccggccgcgccgggccggg
gtgtcgtcgttcggcgtcagcgggacgaacgtgcacctgatcatcgaggaagcccccgag
gagcccgctgcggccgtgccgacgtccgcggacgtcgtgccgctggtggtttccgcacgc
agcacgggttccctggccggtcaggccgaccggctgaccgaggtggacgtccccctcgga
cacctcgccggggcgctggtggccgggcgcgcggtgctcgaggaacgcgcggtcgtggtc
gccggttcggccgaagaagcccgcgcggggctgggtgcgctggctcgcggtgaagccgcg
cccggcgtcgtgaccgggaccgcgggcaagccgggcaaggtcgtctgggtgttcccggga
caggggacgcagtgggtgggcatgggccgggagctcctcgacgcgtccccggtgttcgcc
gagcggatcaaggagtgcgcggcggcactggaccagtggaccgactggtcgctgctggac
gtcctgcgtggtgacggtgacctggattctgtcgaggtgctgcagcccgcgtgcttcgcg
gtgatggtggggctggccgcggtctgggagtcggcgggggtccggccggacgccgtcgtc
ggccactcgcagggcgagatcgccgcggcctgcgtgtccggcgcgctcaccctcgacgac
gccgcgaaggtggtggccctgcgcagccaggcgatcgcggcgcggctgtccggccgcggc
gggatggcgtcggtcgcgttgagcgaggacgaggcgaacgcacggctgggtttgtgggac
ggccggatcgaggtggccgcggtcaacggccccgcctccgtggtgatcgcgggggacgcc
caagccctcgacgaggctttggaggtgctggccggggacggcgtccgcgtccggcaggtc
gcggtcgactacgcctcccacacccggcacgtcgaggacatccgcgacaccctcgccgag
acgctggccgggatcaccgcgcaggccccggacgtgccgttccgctccaccgtcaccggc
ggctgggtgcgggacgccgacgtcctggacggcgggtactggtaccgcaacctgcgcaac
caggtccggttcggcccggccgtggccgagctgctcgagcagggccacggggtgttcgtc
gaggtcagcgcccaccccgtgctggtgcagccgatcagcgagctcaccgacgcggtcgtc
accgggacgctgcggcgcgacgacggcggcctgcgccgcctgctgacgtcgatggccgag
ctgttcgtccgcggtgttcgcgtcgactgggccacgctggtgccgcccgcgcgcgtggac
ctcccgacgtacgccttcgaccaccagcacttctggctccggccggccgcgcaggcggac
gccgtctcgctcggccaggccgcggcggagcacccgctgctcggcgcggtcgtccggctg
ccgcagtcggacggcctggtcttcacctcgcggctgtcgctgcggacgcacccgtggctg
gccgaccacaccatcggcggcgtggtgctgttccccggcaccgggctggtcgaactggcc
gtgcgggccggcgacgaggccgggtgcccggtcctggacgaactcgtgaccgaggcgccg
ctggtcgtgcccgggcagggcggagtgaacgtccaggtcacggtgagcggcccggaccag
aacggcttgcgcacggtggacatccactcccagcgcgacgacgtgtggacccggcacgcg
accggaacggtctcggcgaccccggcgagcagccccggcttcgacttcaccgcgtggccg
ccgccggacgggcagcgcgtcgagatcggcgacttctacgccgacctcgccgagcgcggg
tacgcgtacgggcccttgttccagggcgtgcgggcggtgtggcagcgcggcgaagacgtg
ttcgccgaggtcgcgctgcccgaagaccggcgggaggacgccgcccggttcggcctgcac
ccggcgttgctggacgcggccctgcagaccgggacgatcgccgcggccgcgtccggtcag
ccgggcaagtccgtgatgccgttctcgtggaaccggctggcgctgcacgccgtcggggcc
gcgggcctccgggtccgcgtggcccccggcggaccggacgcgctgaccgtcgaggccgcc
gacgagaccggcgccccggtcctcaccatggactcgctgatcctgcgtgaagtcgccctc
gaccagctggacactgcgcgcgccggctcgctctaccgggtggactggacgccactgccc
actgtggacagtgcggtgcccgctggtcgggccgaggtgctggaagctttcggcgaggag
cccctggacctgaccggccgggtgctggccgccctgcaggcgtggctttccgacgcggcg
gaggaagcccgcctggtcgtggtgacccggggtgcggtgcccgccggagacggtgtggtg
agcgatccggcgggtgccgcggtgtggggcctggtccgggccgcgcaggcggagaacccg
gaccggttcgtcctgctcgacaccgacggcgaggtgccgctggaagcggtgctggcgacc
ggtgagccgcagctcgcgctgcgcggcacgacgttctcggtgccccggctcgcccgcgtc
accgaaccggcggaagccccgctgacgttccgtccggacgggacggtcctggtctccggc
gccgggacgctgggtgcgctcgccgcccgcgacctcgtcacccggcacggcgtccggcgg
ctcgtgctggccagccggcgcggccgggccgccgagggcatcgacgacctcgtcgccgag
ctgaccgggcacggcgccgaagtgacggtcgccgcctgcgacgtctccgaccgcgaccag
gtggcggcgctgctcaaggaacacgcgctgaccgcggtggtgcacacggcgggcgtgttc
gacgccggtgtcaccggcgcgctgacccgggagcggctggccaaggtgttcgcgcccaag
gtcgacgcggccaaccacctcgacgagctgacccgcgacctggacctcgacgcgttcatc
gtctactcgtccgcctcctcgatcttcatgggcgcgggcagcggcgggtacgcggcggcg
aacgcctacctcgacggcctgatggccgcccggcgcgcggcgggcctgccggggctgtcg
ctggcctggggcccgtgggagcagctcaccggcatggccgacaccatcgacgacctcacc
ctggcccggatgagccggcgcgaaggccgcggcggcgtccgcgcgctcggctccgccgac
ggcatggagctgttcgacgccgcgctcgcggccgggcaggcgctgctggtgccgatcgag
ctcgacctgcgcgaggtgcgggccgacgcggccggcggcggcacggtgccgcacctgctg
cgcgggctggtccgcgcgggccggcaggcggcgcggacggcggccaccgaggacggcggc
ctggaacgccggctggccgggctcaccgtggccgaacaggaagcgctgctgctcgacctc
gtccgcggtcaggtcgccgtcgtgctcgggcacgccgacagctccggcgtccgcgccgac
gcggcgttcaaggacgccgggttcgactcgctgacgtcggtggagctgcgcaaccggctg
cgcgagacgaccggcctgaaactgcccgcgacgctggtcttcgaccatccgaacccgctg
gcactggcccggcacctgcgggcggaactcgccgtcgacgaggcatccccggccgatgcg
gtgctggccgggctcgccgggctggaggcggccatcgcggccgccggcgccccggacggc
gaccggatcaccgcgcggctgcgggaactgctcaaggccgccgaggcggccgaggcccgg
ccgggcacctccggcgatctcgacacggccagcgacgaggaactgttcgccctcgtcgac
gggctcgactga
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