Amycolatopsis mediterranei RB: B737_0619
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Entry
B737_0619 CDS
T02804
Symbol
rifD
Name
(GenBank) rifamycin polyketide synthase
KO
K15672
rifamycin polyketide synthase modules 7 and 8
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz01051
Biosynthesis of ansamycins
amz01052
Type I polyketide structures
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
01052 Type I polyketide structures
B737_0619 (rifD)
01051 Biosynthesis of ansamycins
B737_0619 (rifD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01008 Polyketide biosynthesis proteins [BR:
amz01008
]
B737_0619 (rifD)
Polyketide biosynthesis proteins [BR:
amz01008
]
Polyketide synthase (PKS)
Modular type I PKS
cis-AT PKS
Rifamycin PKS
B737_0619 (rifD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Acyl_transf_1
ketoacyl-synt
KR
Ketoacyl-synt_C
PKS_DH_N
SpnB_Rossmann
PP-binding
KAsynt_C_assoc
Docking
RhiE-like_linker
Epimerase
PS-DH
Thiolase_N
adh_short
CurL-like_PKS_C
GDP_Man_Dehyd
Shikimate_DH
Polysacc_synt_2
ACP_syn_III
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AGT81283
LinkDB
All DBs
Position
672884..678070
Genome browser
AA seq
1728 aa
AA seq
DB search
MADEGQLRDYLKRAIADARDARTRLREVEEQAREPIAIVAMACRYPGGVSSPEDLWRLVA
EGTDAVSAFPGDRGWDVDGLVDPDPDRPGTTYTDQGGFLHEAGLFDAGFFGISPREAVAM
DPQQRLLLETSWEAIERTGTDPLSLKGSDIGVFTGVASMGYGAGGGVVAPELEGFVGTGA
APCIASGRVSYVLGFEGPAVTVDTGCSSSLVAMHLAAQALRRGECSMALAGGAMVMAQPG
SFVSFSRQRGLALDGRCKAFSDSADGMGLAEGVGVIALERLSVARERGHRVLAVLRGIAV
NQDGASNGLTAPNGPSQQRVIRAALAEAGLSPSDVDAVEGHGTGTTLGDPIEAQALLATY
GKGRDPEKPLWLGSVKSNLGHTQAAAGVASVIKMVQALRHGVLPPTLHVDRPSTEVDWSA
GAVSLLTEAREWPREGRPRRAGVSSFGISGTNAHLILEEAPEEEPPVAEAPSAGVVPVVV
SARGALAGQAGRLAAFLEASDEPLVTVAGALICGRSRFGDRAVVVAGTRAEATAGLAALA
RGESAADVVTGTVAASGVPGKLVWVFPGQGSQWVGMGRELLEASPVFAARIAECAAALEP
WIDWSLLDVLRGEGDLDRVDVVQPASFAVMVGLAAVWSSVGVVPDAVLGHSQGEIAAACV
SGALSLQDAAKVVALRSQAIAAKLAGRGGMASVALSEEDAVARLRHWADRVEVAAVNSPS
SVVIAGDAEALDQALEALTGQDIRVRRVAVDYASHTRHVEDIQEPLAEALAGIEAHAPTL
PFFSTLTGDWIREAGVVDGGYWYRNLRNQVGFGPAVAELLGLGHRVFVEVSAHPVLVQAI
SAIADDTDAVVTGSLRREEGGLRRLLTSMAELFVRGVDVDWATMVPPARVDLPTYAFDHQ
HYWLRYVETATDAAGPVVRLPQTGGLVFTTEWSLKSQPWLAEHTLEDLVVVPGAALVELA
VRAGDEAGTPVLDELVIETPLVVPERGAIRVQVTVSGPDDGTRTLEVHSQPEDATDEWTR
HATGTLSATPDESSGFDFTAWPPPGARQLDGVPAIWRAGDEIFAEVSLPDDADAEAFGIH
PALLDAALHPALPGDDGLTQPMEWRGLTLHAAGASTLRVRLVPGGFLEAADGAGSLVVTA
KEVALRPVTIARSRTTTRDSLFQLNWIELPESGVVAAADDTEVLEVPAGDSPLAATSRVL
ERLQTWLTEPEAEQLVVVTRGAVPAGDTPVTDPAAAAVWGLVRSAQAENPDRIVLLDTDG
EVPLGAVLAGGEPQVAVRGTALYVPRLARADAAPVSGLHGTVLVSGAGVLGEIVARHLVT
RHGVRKLVLASRRGLDADGAKDLVTDLTGEGADVSVVACDLADRNQVAALLADHRPASVI
HTAGVLDDGVIGTLTPERLAKVFAPKVDAVRHLDELTRDLDLDAFVVFSSGSGVFGSPGQ
GNYAAANAFLDAAMASRRAAGLPGLSLAWGLWEQATGMTAHLGGTDQARMSRGGVRPITA
EEGMALFDTALGAQPALLVPVKLDLREVRAGGAVPHLLRGLVRAGRRQAQAASTVDNQLL
GRLAGLGAPEQEALLVDLVRGQVAAVLGHAGPDAVRADTAFKDAGFDSLTSVDLRNRLRE
STGLKLPATLAFDYPTPLVLARHLRDELGAGDDALSVVHARLEDVEALLGGLRLDESTKT
GLTLRLQGLVARCNGVNDQTGGETLADRLEAASADEVLDFIDEELGLT
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacgagggacaactccgcgactacctcaagcgggccatcgccgacgcccgcgac
gcccgcacgcggctgcgcgaggtcgaggagcaggcgcgggagccgatcgccatcgtcgcc
atggcgtgccggtacccgggcggggtgtcctcgcccgaggacctgtggcggctggtggcc
gaggggaccgacgccgtctccgcgttccccggcgaccgcggctgggacgtcgacgggctc
gtcgacccggaccccgaccgcccgggcacgacgtacacggaccagggtggcttcctccac
gaggccggcctcttcgacgcggggttcttcgggatctcgccgcgggaggccgtcgcgatg
gacccgcagcagcggctgctgctggagacgtcctgggaggccatcgaacgcaccggcacc
gacccgctttcgctgaagggcagcgacatcggcgtcttcaccggcgtcgcgagcatgggt
tacggcgccggtggcggcgtggtcgcgccggagctggagggtttcgtcggcaccggtgcg
gcgccgtgcatcgcgtccggccgggtgtcgtacgtcctcggcttcgaaggcccggcggtc
accgtcgacaccgggtgttcgtcgtcgctggtggcgatgcacctcgccgcgcaggcgctg
cggcggggtgagtgctcgatggctctggccggcggcgcgatggtgatggcccagccgggt
tcgttcgtgtccttctcgcggcaacgcgggctcgccctggacgggcgctgcaaggcgttt
tcggacagcgccgacgggatgggactggccgagggcgtcggcgtcatcgcgctggaacgg
ctgtcggtcgcccgtgagcgtgggcaccgggtgctggccgtgctgcgcggtatcgcggtg
aaccaggatggcgcgtcgaacggcttgaccgccccgaacggcccgtcccagcagcgggtg
atccgcgccgcgctggccgaagccgggctgtcgccgtccgatgtggacgccgtcgaaggg
cacgggacgggcacgacgctgggcgatccgatcgaagcgcaggcgttgctggccacctac
ggcaagggccgggacccggagaagccgctctggctgggctcggtgaagtcgaacctcggg
cacacgcaagcggccgcgggcgtggccagcgtgatcaagatggtgcaggcgctgcgccac
ggcgtgctgcccccgacgctgcacgtcgaccggccgtccaccgaagtcgactggtcggcc
ggtgcggtctcgctgttgacggaggctcgggagtggccgcgcgaagggcggccgcgccgg
gccggggtgtcctcgttcgggatcagcgggaccaacgcgcacctcatcctggaggaagcg
cccgaggaggagccgcccgtcgccgaagcgccttccgccggagtggtgcccgtggtggtg
tcggctcgtggggccctggcgggtcaggccggccggctggccgcgttcctcgaggcgtcc
gacgagccgttggtgaccgtcgccggggcgctgatctgcggccggtcccggttcggcgac
cgggccgtcgtggtggcgggcacgcgcgcagaggcgacggccgggctggccgcgctggcc
cgcggcgaaagcgccgccgacgtcgtgaccggcacggtcgcggcctcgggcgtgccgggc
aagctcgtgtgggtgttcccgggccagggttcgcagtgggtgggcatgggccgggagctc
ctcgaagcctcgccggtgttcgccgcgcggatcgcggagtgcgcggctgccctcgaaccg
tggatcgactggtcgctgctggacgtcctccgtggcgagggcgacctcgaccgcgtcgac
gtggtgcagcccgcgagtttcgcggtgatggtcggcctggccgcggtgtggtcgtccgtc
ggggtggtgcccgacgcggtgctcgggcactcgcagggggagatcgcggcggcgtgcgtg
tcgggggcgttgtcgctgcaggacgcggcgaaggtggtcgcgttgcgcagccaggcgatc
gcggcgaagctggccggccgcggcggcatggcctcggtcgcgctgagcgaggaagacgcg
gtcgcgcggttgcggcactgggcggaccgggtcgaggtggccgcggtcaacagcccgtcg
tcggtggtgatcgccggcgacgccgaagccctcgaccaggccctcgaagcactgaccggc
caggacatccgggtccggcgggtggcggtggactacgcctcgcacacccggcacgtcgaa
gacatccaggagcccctcgccgaggcactggccgggatcgaggcgcacgcgccgaccctg
ccgttcttctcgaccctcaccggtgactggattcgcgaagcgggcgtcgtggacggcggc
tactggtaccggaacctgcgcaaccaggtcggtttcggcccggcggtggccgagctgctc
ggcctcggccaccgggtgttcgtcgaggtcagcgcgcaccccgtgctcgtccaggcgatc
agcgcgattgccgacgacaccgacgcggtcgtcaccggctcgctgcggcgcgaggagggc
ggcctgcggcggctgctgacgtcgatggccgagctgttcgtccgcggagtcgacgtggac
tgggccacgatggtgccgccagcgcgggtcgatttgccgacctacgccttcgaccaccag
cactactggctgcggtacgtcgagaccgcgaccgacgcggccggtccggtggtccggctg
ccgcagacgggcggcctggtcttcaccaccgagtggtcgctgaagtcacagccgtggctg
gccgagcacaccctggaagacctggtcgtcgtccccggcgcggcactggtcgagctggcc
gtccgggccggtgacgaggccgggaccccggtgctggacgaactcgtcatcgagacgccc
ctggtcgtgccggaacgcggcgcgatccgggtgcaggtcacggtgagcggaccggacgac
ggcacacggaccctggaagtgcattcccagcccgaagacgccaccgacgaatggacccgg
cacgccaccggcacgctgtcggcgaccccggacgaaagcagcgggttcgacttcacggcc
tggccgcccccgggcgcccggcagctcgacggcgttccggcgatctggcgggccggcgac
gagatcttcgccgaagtctccctgcccgacgatgcggacgccgaggcattcggcatccac
cccgcgctcctggacgcggccctgcaccccgccctgcccggcgatgacggtctgacgcag
cccatggaatggcgtggcctgacgctgcacgccgcgggggcgtcgacgctgcgggtccgg
ttggtgcccggcgggttcctggaagcggccgacggcgccggcagcctggtcgtcacggcg
aaggaggttgccctccgcccggtgacgatcgcgcggtcgcgcaccaccacccgagactcg
ctgttccagctgaactggatcgagctgcccgagagtggcgtggtggccgcggcagacgac
accgaggtgctggaggtgcccgcgggcgattccccgctggcggcgacctcccgagtcttg
gagcggctccagacctggctgaccgagcccgaggcggaacagctggtcgtcgtgacgcgc
ggcgcggtgcccgccggggacaccccggtgaccgacccggccgcggcggcggtctggggc
ctggtccggtccgcgcaggcggagaacccggaccggatcgtcctgctcgacaccgacggc
gaagtcccgctgggtgcggtgctggccggcggcgagccgcaggtcgcggtgcgcggcacg
gcgctgtacgtcccgcgcctggcccgcgccgacgcggccccggtatccggtctacatggg
acggtcctcgtctccggtgccggtgtgctcggcgagatcgtggcgcggcacctggtcacc
cgccacggcgtgcgcaagctggtgctcgccagccgccgcggcctggacgccgacggcgcg
aaggacctcgtcaccgacctcaccggcgagggcgcggacgtgtccgtcgtcgcctgcgac
ctggccgatcggaaccaggtggccgcgctgctggccgaccaccgcccggcgagcgtcatc
cacacggcgggcgtcctcgacgacggcgtcatcgggacgctgaccccggagcggctggcc
aaggtgttcgcgcccaaggtcgacgcggtccgccatctcgacgagctgactcgcgacctc
gacctcgacgcgttcgtcgtgttctcctccggctccggcgtgttcggttcgccggggcag
ggcaactacgcggcggcgaacgcgttcctggacgcggcgatggcgagccgccgcgcggcg
ggtcttcctggtctctcgctggcgtggggcctgtgggaacaggccaccggcatgaccgcg
cacctcggcggcaccgaccaggcccggatgagccggggcggggtgcggccgatcacggcc
gaggaaggcatggccctgttcgacacggcactgggtgcgcagcccgcgctgctcgtgccg
gtcaagctcgacctgcgggaggtgcgggccggcggggccgtgccgcacctgctgcgcggg
ctggtccgggccgggcggcggcaggcccaagccgcgtccacagtggacaaccagctgctg
ggccggctggccgggctgggcgcgcccgagcaggaggcgctgctcgtcgacctcgtgcgc
ggccaggtcgcggcggtgctcgggcacgccgggccggacgcggtccgcgccgacacggcg
ttcaaggacgccgggttcgactcgctcacctcggtcgacctgcgcaaccggctgcgggag
agcaccgggctgaagctgcccgccacgctcgccttcgactacccgaccccgctggtcctc
gcccggcacctgcgtgacgagctcggggccggcgacgacgcgctttcggtggtgcacgcg
cggctcgaagacgtcgaggcgctgctcggcgggctgcgcctcgacgaatccacgaagacc
ggtctcaccctccggctgcagggcctggtcgcccggtgcaacggcgtgaacgaccagacc
ggcggcgaaacgctggcggaccggctcgaggccgcgtccgccgacgaagtcctcgacttc
atcgacgaggagctgggtctcacctga
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