Amycolatopsis mediterranei RB: B737_1128
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Entry
B737_1128 CDS
T02804
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz03420
Nucleotide excision repair
amz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B737_1128
03430 Mismatch repair
B737_1128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amz03400
]
B737_1128
Enzymes [BR:
amz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B737_1128
DNA repair and recombination proteins [BR:
amz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B737_1128
MMR (mismatch excision repair)
Other MMR factors
B737_1128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Replic_Relax
Motif
Other DBs
NCBI-ProteinID:
AGT81792
LinkDB
All DBs
Position
1201930..1205172
Genome browser
AA seq
1080 aa
AA seq
DB search
MSPLLIANPVEPAELADALGLHRPTPEQATVIAAPVEPSLVVAGAGAGKTETMAARVVWL
VANGIVSPDRVLGLTFTRKAARQLGERVRARLRRLAGSGLLDRLDPTGGLRSTVVAGEPT
VLTYHAYAGRLLSEHGLRLPVQPGVRLLSETSSWQIAHRVVSTWDNELDTDRVPPTVTAD
LLALAGELGEHLVSTEQLAEYTTWLCRVIENAPRAKGQRAALPQKLTEIMAAQHFRLALL
PLVDDYHRRKRNEGALDFADQMSLAAQLAGGYPSVVRGERERYGAVLLDEYQDTGHAQRV
LLRALFGGVENPPMPVTAVGDPAQAIYGWRGASAANLPRFTTDFPRFDGERLVPAHEFGL
LTSFRNPPEILDLANAIAEPLRARGLGVERLRAREGAGPADIACALLPDIRAERAWVADA
LARRWYAHQEQTGKPPTAAVLVRRRADMAPIAAELRARGLPVEVVGLGGLLDEPEVADLV
STLKVLADPLSGSAAARLLTGARWRLSAADVAALWRRAGELSSPEKPDTPELVVERVEQA
GLIDAIDEPGDPARYSDEGYKRIRRIGWELAALRRRLDQSLPELVADVERTMLLDVESLA
RPGSAGRAHLDAFAEVVTDYAETAPTATLLSFVDYLNTAAHAEDGLTPGEVEVVPDRVQV
LTVHSAKGLEWEVVAVPHLVHDVFPGRRRSSSWLRTATSLPAKLRGDAEDLPELRIAEGY
DRKEVQEGLELHEAGFVEREQAEERRLCYVALTRSEHALIVSGHWWNESSSRVKGPSEFL
TEIADVVRETGAGQLAEWAPEPTEDDENPLVSDSRAARWPVDPLSDRRTGVQTGVELVSE
ALASSPDEEASEEDDDPDGWLTDTDVLLEEWARKDDHVKLVPLPSRLSVSQLVALADDAA
RLAADLRRPLPVEPNSFARRGTEFHGWLERRFAGDQLIEIDDLPGAADFGEAPDADFEEL
QTEFEKSEWASRVPVAVEVTFSADVEGLTLRGRMDAVFADPEGGWTVVDWKTGAVPPESR
IPALSVQLAAYRMAWAALKNVPVEQVRAAFHYVRANRTIRPADLLDPEALRSLLRDIPEA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccgctcctcatcgccaaccccgtcgagcccgccgaactcgccgatgccctcggc
ctgcaccggccgacgcccgaacaggccaccgtcatcgccgcgccggtcgaaccctcgctc
gtcgtcgccggggccggggccgggaagaccgaaaccatggccgcgcgggtcgtctggctc
gtcgccaacggcatcgtcagccccgaccgcgtcctcggcctcaccttcacccgcaaagcc
gcgcgccagctcggcgaacgcgtccgcgcccggctccgccgcctcgccgggtccggcctg
ctcgaccggctcgacccgaccggcggcctgcggtccactgtggtcgccggcgaacccacc
gtcctcacctaccacgcctacgccgggcgcctgctgtccgaacacggcctccgcctgccg
gtccagcccggcgtccggctcctctccgaaacctcgtcgtggcagatcgcgcaccgcgtg
gtgtccacctgggacaacgaactcgacaccgaccgcgtcccgccgaccgtcaccgccgac
ctcctcgccctggccggtgagctgggcgagcacctcgtctccaccgagcagctcgccgaa
tacacgacgtggctctgccgcgtcatcgagaacgcgccgcgcgccaaggggcagcgggcc
gcgctgccgcagaagctcaccgaaatcatggccgcgcagcacttccggctcgcgctgctg
ccgctcgtcgacgactaccaccgccgcaagcgcaacgaaggcgcgctggacttcgccgac
cagatgtcgctcgccgcccagttggccggcgggtacccgtcggtcgtgcggggggaacgc
gagcgctacggcgccgtgctgctcgacgagtaccaggacaccgggcacgcccagcgcgtg
ctgctgcgggcgctgttcggcggcgtcgagaacccgccgatgccggtcaccgcggtcggc
gaccccgcgcaggcgatctacggctggcgcggcgccagcgcggccaacctgccccggttc
accacggacttcccgcgcttcgacggcgaacggctcgtccccgcgcacgaattcgggctg
ctgaccagtttccgcaacccgccggagatcctcgacctcgcgaacgcgatcgccgaaccg
ctgcgcgcccgcggcctcggcgtcgaacggctgcgggcgcgcgagggcgccggaccggcg
gacatcgcgtgcgcgctgctgccggacatccgcgccgagcgcgcgtgggtcgccgacgcg
ctcgcccggcgctggtacgcccaccaggaacagaccggcaagccgccgaccgccgcggtg
ctggtgcgccgccgcgccgacatggccccgatcgccgccgaactgcgggcgcgcgggctg
ccggtggaagtcgtcgggctcggcggcctgctcgacgagcccgaggtcgcggacctcgtt
tcgacgctgaaggtgctggccgacccgctgtccgggagcgcggcggcccggctgctgacc
ggcgcgcgctggcggctctcggccgccgacgtcgccgcgctgtggcggcgggccggcgag
ctgtccagcccggagaagccggacacgccggagctggtcgtcgagcgcgtcgagcaggcc
gggctgatcgacgccatcgacgagccgggcgacccggcgcggtactccgacgaggggtac
aaacgcatccggcggatcggctgggagctggccgcgctgcggcggcggctcgaccagtcg
ctgccggagctcgtcgccgacgtcgaacgcacgatgctcctggacgtcgaatcgctggcc
cggccgggctccgcggggcgggcgcacctggacgcgttcgccgaagtcgtcaccgactac
gccgagacggcgccgacggccaccctgttgtcctttgtggactacctgaacaccgccgcg
cacgccgaggacgggctcacgccgggtgaggtcgaggtcgtcccggaccgggtgcaggtg
ctgaccgtgcactcggcgaaggggctcgagtgggaagtcgtcgccgtgccgcacctggtg
cacgacgtgttccccgggcggcggcggtcgtcgtcgtggctgcggaccgcgacgtcgctg
ccggcgaagctgcggggtgacgccgaggacctgcccgagctgcggatcgccgaaggctac
gaccgcaaggaagtccaagaaggactggagctgcacgaagccgggttcgtcgagcgggag
caggcggaggaacggcggctctgctacgtcgcgctgacccggtccgagcacgcgctgatc
gtctccgggcactggtggaacgaaagcagcagccgggtcaaggggccgtcggaattcctc
accgagatcgccgacgtcgtgcgcgagaccggcgccgggcagcttgcggagtgggcgccg
gaacccaccgaggacgacgaaaacccgctggtgtcggactcgcgggcggcgcgctggccg
gtcgatcccctgtccgaccgccgcaccggcgtgcagaccggcgtggaactcgtgtccgaa
gcgctcgcgtcgtcgccggacgaggaagcgtccgaagaggacgacgacccggacggctgg
ctgaccgacaccgacgtcctgctggaggagtgggcgcgcaaggacgaccacgtcaagctg
gtcccgttgccgtcgcggctttcggtgagccagctggtcgcgctggccgacgacgccgcc
cggctcgccgccgacctgcgccggccgctcccggtggaacccaacagcttcgcccgccgc
ggcacggagttccacggctggctcgaacgccggttcgcgggcgaccagctcatcgagatc
gacgacctcccgggcgcggccgacttcggcgaggcccccgacgcggacttcgaggaactg
cagacggagttcgagaagagcgagtgggcgtcgcgggtcccggtggcggtggaggtgacg
ttttcggccgacgtcgaaggcctcaccctgcgcggccgcatggacgcggtcttcgccgac
cccgaaggcggctggacggtggtcgactggaagaccggcgcggtcccgccggagtcccgg
atcccggccctgtcggtccagctggcggcctaccggatggcctgggcggcgctgaagaac
gtcccggtggagcaggtccgcgcggccttccactacgtccgcgcgaaccgcacgatccgc
ccggcggatctcttggacccggaagccctgcgcagcctcctccgcgacatccccgaggcg
tga
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