Amycolatopsis mediterranei RB: B737_1277
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Entry
B737_1277 CDS
T02804
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
amz
Amycolatopsis mediterranei RB
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amz03019
]
B737_1277 (hrpB)
Enzymes [BR:
amz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B737_1277 (hrpB)
Messenger RNA biogenesis [BR:
amz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B737_1277 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
AAA_25
AAA_19
AAA_22
nSTAND3
AAA_28
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGT81941
LinkDB
All DBs
Position
complement(1374722..1377115)
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AA seq
797 aa
AA seq
DB search
MKLPDLPVRSVLPDVVAALDERGAAVLVAPPGTGKTTLVPLALAAAAEGRVVVAEPRRLA
ARAAAARMAALLGEPVGETVGYAVRGDRKVSARTRIEVVTSGLLVRRVQGDPELPGVSTV
LLDECHERHLDADLLLALLLDVRAGLREDLRLLATSATVASGRLAALLGDAPVVTATART
YPVEFSYLPPARGERVEVCVARAVRTALSEGDGDVLAFLPGAGEIARTAGLLRLSDVDVL
PLHGRLSAAHQDDALRPRDRRRVVLATAVAESSLTVPGVRAVVDSGLARVPRVDHRRGLP
GLATVRVSAAVATQRSGRAGREAPGRAYRCWAEHEQATLPAYPEPEIRTAELARLALELA
CWSTPDGSGLAWWDPPGEGALAAGRALLVTLGATSPDGTVTQRGRRMAELGLHPRLARAL
LDGSSEVGARNAAEVVALLDAGATLTDVHAELRRLRSATDEGARRWKREARRLEGLVPER
RAERPAPADPALVVALAHPERLAKRRPGDAPVYLMAGGTAAELPPGSGLDAEWLAIAEAT
RDPGRVHGTIRLAAAADETLAVRTGAVSEVDEVTWDGDVVARRVRKLGAIVLSEKPLKNA
DVRGALVAGLKSEGLGLLKWSQDATRLRERMAFLHRVLGPPWPPVDDAALLSDVDSWLDL
GTARRKADLANINAGTALKALLPWPEAAKLDDLAPDRLEVPSGSHIRVDYRGDQPVLAVK
LQETFGWTETPVIAGVPVVLHLLSPAGRPAAITADLASFWTSGYPAVRADLRGRYPKHPW
PEDPAGAVPTRHTRRRS
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctccccgatctgccggtccggtccgtgctgcccgacgtcgtcgccgcgctcgac
gaacgcggcgcggcggtgctcgtggcgccgcccggcacggggaagacgacgctggtcccg
ctcgccttggcggcggcggccgaaggccgggtcgtggtcgccgagccgcggcggctggcg
gcgcgcgcggcggcggcgcggatggccgcgctgctgggtgaaccggtcggcgagacggtg
ggttacgccgtgcgcggtgaccggaaggtgagcgcgcggacccgcatcgaggtcgtgacg
tcggggctgctggtgcggcgcgtgcagggcgatccggaactgcccggcgtctcgacggtg
ctgctcgacgagtgccacgagcggcacctggacgccgacctgctgctcgcgctgctcctg
gacgtccgcgccgggctgcgcgaagacctgcggctgctggcgacgtcggcgacggtcgcg
tccgggcggctcgcggccctgctcggcgacgccccggtggtgacggccacggcgcggacg
tacccggtggagttctcctacctcccgcccgcgcgcggtgagcgcgtcgaggtgtgtgtc
gcgcgggcggtgcgaacggcgttgtccgagggcgacggcgatgtgctggctttcctgccc
ggcgcgggcgaaatcgcccggacggcgggactgttgcgattgtccgatgtggacgttctc
ccgctgcacggccggttgtcggcggcacaccaggacgacgcgctgcgcccgcgtgaccgg
cggcgggtggtgctggcgacggcggtggcggagtcgagcctgacggtgccgggtgtgcgc
gcggtggtggactcgggcctggcgcgcgtgccgcgcgtcgaccaccggcgcgggctgccg
gggctggcgacggtccgggtgtcggcggcggtggccacgcagcggtccggccgcgcgggc
cgcgaggcgcccgggcgggcgtaccgctgctgggccgagcacgagcaggcgacgctgccg
gcgtaccccgagccggaaatccgcacggccgagctggcccggctggccctggagctggcg
tgctggtcgacccccgacggcagcgggctcgcctggtgggacccaccgggcgaaggcgcg
ctggcggcgggccgggcgctgctggtgacgctcggcgcgacgtccccggacggcacggtg
acccagcgcggacggcggatggccgagctgggcctgcacccgcggctggcccgcgcgctc
ctggacggatcttccgaagtcggcgcccgcaacgcggcggaggtggtggcgctgctggac
gcgggcgcaacgctgacggacgtgcacgcggagctgcgccgcctccgctcggcgaccgac
gaaggggcgcggcgctggaagcgtgaagcgcggcggctggagggcttggtcccggaacgg
cgggccgagcgtccggccccggccgatcccgcgctggtcgtcgccctcgcgcatcccgaa
cggctcgccaagcggcgtccgggtgacgcgcccgtctacctcatggccggcggcaccgcc
gccgaactcccgcccggcagcggcctcgacgccgaatggctggcgatcgccgaagccacc
cgcgatcccggccgcgtccacggcaccatccgcctcgccgcggccgccgacgaaaccctc
gccgtccgcaccggcgcagtgtccgaagtggacgaagtcacctgggacggcgatgtcgtc
gcccggcgggtccgcaagctcggcgccatcgtcctgtccgagaagccgctcaagaacgcc
gacgtccgcggcgccctggtcgccggcctgaaatccgagggactcggcctgctcaagtgg
agccaggacgcgacccgcctgcgcgagcggatggccttcctgcaccgcgtcctcggccca
ccctggccgccggtcgacgacgccgccctcctgtccgatgtggacagctggctggacctc
ggcaccgcccgccggaaggcggacctggcgaacatcaacgcgggcaccgccctgaaggcc
ctcctcccctggccggaggcggcgaaactcgacgacctcgccccggatcgcctcgaagtg
ccgtcggggtcgcacatccgcgtcgactaccgcggtgaccagccggtgctcgccgtgaag
ctgcaggaaaccttcggctggaccgaaaccccggtgatcgccggcgtcccggtggtgctg
cacctgctctcccccgccggccggcccgcggcgatcaccgccgacctcgcgtccttctgg
acgtccggctacccggccgtgcgcgccgacctgcgcggccgctacccgaagcacccctgg
ccggaggacccggccggcgccgtcccgacccgccacacccgccgccgctcctga
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