Amycolatopsis mediterranei RB: B737_4062
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Entry
B737_4062 CDS
T02804
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz00250
Alanine, aspartate and glutamate metabolism
amz00310
Lysine degradation
amz00350
Tyrosine metabolism
amz00650
Butanoate metabolism
amz00760
Nicotinate and nicotinamide metabolism
amz01100
Metabolic pathways
amz01120
Microbial metabolism in diverse environments
Module
amz_M00027
GABA (gamma-Aminobutyrate) shunt
amz_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
B737_4062 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
B737_4062 (gabD)
00310 Lysine degradation
B737_4062 (gabD)
00350 Tyrosine metabolism
B737_4062 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
B737_4062 (gabD)
Enzymes [BR:
amz01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
B737_4062 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
B737_4062 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
B737_4062 (gabD)
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Motif
Pfam:
Aldedh
DUF1487
Motif
Other DBs
NCBI-ProteinID:
AGT84726
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Position
4520659..4522233
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AA seq
524 aa
AA seq
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MTLTPLELTRPASVTDAFLEQLVARVPGSSGATWKLTEVYTGDVLVELPQSPPEDIERAF
AVAREAQRKWAATPVKERLAVFRRAHALFVEHARTVADLIQVESGKNRRMAIEETCDPPM
VMSHYLKRAAKLLAPTKRGGPVPMLTTSTEVRLPKGVVGIIAPWNFPFATGVSDAIPALM
AGNAVVLKPDNKTALSPLYGVRLLEQAGLPEGLFQVVCGEGPDVGPTLIDHADYVMFTGS
TATGRVIGERAGRNLIGCCLELGGKNPMIVLEDADFAEAVQGAIFGAFGNTGQICMHIER
IYLPESRYEEFKTAFVAAASALDVRAAYDFGPDMGSLVSVDHMRRVKSHVDDAVAKGATV
LCGGKPRPDLGPAFFEPTILEGVTPDMLCGVTETFGPVVALHKYRTVDEAVALANDTDYG
LNASVWSTDVTAARAVAARIESGNVNVNDILATAYAAKGTPSGGVKNSGVGARHGDQGLL
KYTDVQNLAVLKKQVMGPRPGQGYEKYVESMLSGLKLMRKLRIR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcaccccgctcgaactcacccgtccggcgtcggtcaccgacgccttcctggag
cagctcgtggcccgggtgcccggctcgtccggcgcgacctggaagctcaccgaggtctac
accggcgacgtgctcgtcgagctgccgcagtcgccgcccgaggacatcgagcgggcgttc
gccgtcgcgcgcgaggcccagcggaagtgggcggccacgccggtgaaggagcggctggcg
gtgttccggcgggcgcacgcgctgttcgtcgagcacgcgcggaccgtcgccgacctcatc
caggtcgagagcggcaagaaccggcggatggcgatcgaagagacctgcgacccgccgatg
gtgatgagccactacctgaagcgggccgcgaagctgctggcgccgacgaagcgcggcggc
ccggtcccgatgctgacgacgtcgaccgaagtccggctgcccaagggggtcgtcgggatc
atcgcgccgtggaacttcccgttcgccaccggggtttccgacgcgatcccggcgttgatg
gccggcaacgcggtggtgctgaagcccgacaacaagaccgcgctgtcgccgctctacggc
gtccggctgctggagcaggcggggctgccggaagggctgttccaggtggtgtgcggcgag
ggcccggacgtcggccccacgctgatcgaccacgccgactacgtgatgttcaccggttcc
acggcgaccggccgggtgatcggcgagcgcgcgggccgcaacctcatcggctgctgcctc
gagctcggcgggaagaacccgatgatcgtgctggaagacgccgattttgccgaggccgtc
cagggtgcgatcttcggcgcgttcggcaacaccggtcagatctgcatgcacatcgagcgg
atctacctgccggaatcccggtacgaggagttcaagacggcgttcgtggcggcggcctcg
gccctcgacgtccgcgcggcgtacgacttcggccccgacatgggttcgctggtctcggtc
gaccacatgcgccgcgtcaagtcccatgtggacgatgcggtcgccaagggcgccaccgtt
ctctgcggcggcaagccccgacccgacctcggcccggcgttcttcgagccgacgatcctc
gagggcgtcacgccggacatgctctgcggcgtgaccgagacgttcggcccggtggtggcg
ctgcacaagtaccgcaccgtcgacgaagcggtggcgctggccaacgacacggactacggc
ctcaacgcctcggtctggagcaccgacgtcaccgcggcgcgcgcggtggcggcccggatc
gagtccggcaacgtgaacgtgaacgacatcctcgcgaccgcgtacgcggccaagggaacg
ccgtcgggcggggtgaagaactccggcgtcggcgcccggcacggcgatcaggggctgctg
aagtacacggacgtgcagaacctggccgtgctgaagaagcaggtgatggggccgcggccg
gggcaggggtacgagaagtacgtcgagagcatgctttccgggctgaagctgatgcggaag
ctgcggatccggtag
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