Amycolatopsis mediterranei RB: B737_4240
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Entry
B737_4240 CDS
T02804
Symbol
topA
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
amz
Amycolatopsis mediterranei RB
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amz03032
]
B737_4240 (topA)
03400 DNA repair and recombination proteins [BR:
amz03400
]
B737_4240 (topA)
Enzymes [BR:
amz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B737_4240 (topA)
DNA replication proteins [BR:
amz03032
]
Prokaryotic type
DNA Topoisomerases
B737_4240 (topA)
DNA repair and recombination proteins [BR:
amz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B737_4240 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Glyco_hydro_19
Motif
Other DBs
NCBI-ProteinID:
AGT84904
LinkDB
All DBs
Position
complement(4702252..4703265)
Genome browser
AA seq
337 aa
AA seq
DB search
MGRIRLRRSDLRGPGIKRIRRGRGFSYAMPDGSPVTDAELLARIKDLVIPPAWKNVWICP
YPNGHVQAVGTDDAGRRQYLYHEQWRRDRDEEKHDRVLQMARRLPQWRASVAEDLTGPGL
TRKRVLAAALRMLDRGIFRTGGEEYAEENGTHGVATLLRSHAAVRGDECRFCYVAKGGLD
REVAICDAELAAVMKSLLRSRSGSDRLLVYREGGTWHEVHAADINERFKELAGEDCTAKD
MRTWNATVLAAAAFAAADPPTSETARKRAEAKVMKEVSTALGNTPAVCRSSYVDPRLVEA
YRAERTIAPALKRAAKLDGDDARAVLEKACARLLKAS
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
gtgggacgcatcagactccggcgcagtgacctgcgcggcccgggcatcaagcgcatccgc
cgcggccgcgggttctcctacgccatgcccgacggctcgccggtgaccgacgccgagctg
ctggcccggatcaaggacctcgtcatcccgcccgcgtggaagaacgtgtggatctgcccg
tacccgaacgggcacgtccaggcggtcggcaccgacgacgccgggcggcgccagtacctc
taccacgagcagtggcggcgtgaccgggacgaggagaagcacgaccgcgtgctgcagatg
gcccgccggctgccgcagtggcgcgcctcggtggcggaagacctcaccggacccggcctg
acgcgcaagcgggtgctggcggcggcgctgcgcatgctcgaccggggcatcttccgcacc
ggcggcgaggagtacgcggaggagaacggcacccacggcgtcgcgacgctgctgcgctcg
cacgccgcggtccggggcgacgagtgccggttctgctacgtcgccaagggcggcctggac
cgcgaggtggccatctgcgacgccgagctggccgcggtgatgaagtcgctgctgcgcagc
cggtccggcagcgaccgcctgctggtctaccgcgagggcggcacgtggcacgaggtgcac
gccgcggacatcaacgagcggttcaaggagctggcgggcgaggactgcacggcgaaggac
atgcggacgtggaacgcgacggtcctggcggcagcggcgttcgccgcggcggaccccccg
acgtccgaaacggcccgcaagcgcgcggaggcgaaggtgatgaaggaggtctcgacggcg
ctcgggaacacccccgcggtctgccgatcgtcctatgtggacccccggctggtggaggct
taccgcgccgaacggacgatcgcgcccgcgctcaagcgcgcggcgaagctcgacggggac
gacgcacgggcggtgctggagaaggcgtgcgcgcggctgctgaaggcgtcgtga
DBGET
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