Amycolatopsis mediterranei RB: B737_6878
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Entry
B737_6878 CDS
T02804
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
amz
Amycolatopsis mediterranei RB
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amz03019
]
B737_6878 (hrpA)
Enzymes [BR:
amz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B737_6878 (hrpA)
Messenger RNA biogenesis [BR:
amz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B737_6878 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
T2SSE
NACHT
AAA_23
SLFN-g3_helicase
ABC_tran
AAA_30
ResIII
AAA_16
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AGT87541
LinkDB
All DBs
Position
complement(7728007..7731915)
Genome browser
AA seq
1302 aa
AA seq
DB search
MSEPSPFHALRARLPELMPRDEQRLRRRLEGARKARDRDSALARIAADVDAAELRLRSRR
ESVPKIEYPAELPVSKLKDEIAAAIDKHQVVIVAGETGSGKTTQLPKICLELGRGIRGQI
GHTQPRRLAARTVADRIASELKTELGETVGYKVRFTDQSGQDTLVKLMTDGILLAEIQTD
RSLRQYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHFDDAP
IVEVSGRTYPVEVRYRPLVDPENPAAPEGSGDADERDQTQGILDAVEELCAEGPGDILVF
LSGEREIRDTADVLNRANLRNTEVLPLYARLSSAEQQRIFQSHTGRRVVLATNVAETSLT
VPGIKYVVDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEAD
FEARPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEPPDRRQVADGVGLLQELGAFA
PGGSGSDRSLTDIGRKLAQLPVDPRMGRMVLEAARNGCVREVMIIAAALSIQDPRERPAE
KQQAADAQHARFADPTSDFLAYLNLWEYVAEQQKALSGNQFRRMCRTEYLNYLRLREWQD
IFSQLRQLAKPLGISLNTNTAPADPQRVHTSLIAGLLSHIGLKDPAKGDYLGARGARFGV
FPGSALFKKQPRWVMSAELVETSRLWARVNARIEPEWVEPLAGHVVKRSYSEPHWERKQG
AVMAIEKVTLYGVPLIADRRVNYGRIDPELSRALFIRHALVEGDWQTRHHFFAENRALLE
EVEDLENRARRRDILVDDQTLYEFYDARVPADVVSVRHFDSWWKKARHTEPDLLSFEKSM
LINESAGGVREGDYPDSWTQGTQVFKLTYQFEPGADADGVTVHIPLPVLNQVTPDGFDWQ
VPGLRAELVTQLIKSLPKAVRRNFVPAPDTAREVLSRVSPSDGPLLEVLGRELRALRGIT
VPYADWDLSSVPEHLKMTFRVVDERGRRVAEGKDVAELQRRLAPKVRETISKAANTLEKA
GLTKPSFGSLPEVFSSHQRGHDVKAYPALVDEGATVAVRLLDTPAQQEHAMWAGTRRMLR
LNLNSPMKFITRSLSNSSKLVLNRNPHGSVAALLEDCVDCAVDALMAAGGGPAFDETGFK
VLLEKVRAGLHPAVLDVLTEVEKILRAANDVEVQLSSSRGPAESLADIRAQLTALVYPGF
VTETGASRLRNVVRYLQGISRRLEKLVSEPTRDLQRTADIAWIQGEYADALASLPPGTSS
PELREVRWMIEELRVSFFAQTLGTAHPVSLKRITKALDDALA
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagccatcccccttccacgcgctgcgagcgcgcctgcccgagctcatgccgcgt
gacgagcagcggctgcgccgccggctcgagggcgcccgcaaagcccgtgaccgtgacagc
gccctcgcgcggatcgccgccgacgtcgacgccgccgagctgcgcctgcggtcgcggcgc
gaaagcgtgcccaagatcgagtaccccgccgagctgccggtcagcaagctcaaggacgag
atcgccgccgccatcgacaagcaccaggtcgtgatcgtcgcgggggagaccggctcgggc
aagaccacccagctgccgaagatctgcctggagctcgggcgcggcatccgcggccagatc
gggcacacgcagccgcggcggctggccgcgcgcacggtcgccgaccgcatcgcgagcgaa
ctgaagaccgagctcggcgagaccgtcggctacaaggtgcggttcaccgaccagtccggg
caggacacgctggtcaagctgatgaccgacggcatcctgctggccgagatccagaccgac
cggtcgctgcgccagtacgacacgctgatcatcgacgaggcccacgagcgcagcctcaac
atcgacttcatcctcggctacctcaagcagctgctgccgcgccgccccgacctcaaggtg
atcatcacctcggcgacgatcgacccggaacggttctcgaagcacttcgacgacgcgccg
atcgtcgaggtctccggccggacgtacccggtcgaggtgcgctaccggccgctcgtcgac
cccgaaaatccggcagctcccgaaggctccggagacgccgacgagcgcgaccagacccag
ggcatcctcgacgccgtcgaggagttgtgcgccgagggccccggcgacatcctggtgttc
ctgtccggcgagcgcgagatccgcgacaccgccgacgtgctcaaccgggcgaacctccgc
aacaccgaggtgctgccgctgtacgcgcggctttcgtcggccgagcagcagcgcatcttc
cagtcccacaccgggcgccgggtggtgctcgcgaccaacgtcgccgagacgtcgctgacc
gtgccgggcatcaagtacgtcgtcgacccgggcaccgcgcggatctcccgctacagccac
cgcaccaaggtgcagcggttgccgatcgaaccggtgtcgcaggcgtcggcgaaccagcgc
aagggccgctgcggccggacgtcggacggcatctgcatccggctctactccgaagcggac
ttcgaggcgcggcccgagttcaccgatccggagatcctgcggaccaacctcgcctcggtc
atcctgcagatgacgtcgctgggcctcggcgacatcgcggcgttcccgttcgtcgaaccg
ccggaccgccgccaggtcgccgacggcgtcggcctgctgcaggagctgggcgcgttcgcg
ccgggcggttccgggtccgatcgcagcctgaccgacatcggacgcaagctcgcgcagctg
ccggtcgacccgcggatgggccggatggtgctggaggcggcccgcaacggctgcgtccgc
gaggtgatgatcatcgcggccgcactgtccatccaggacccgcgggaacggccggccgag
aagcagcaggccgcggacgcccagcacgcgcggttcgccgatccgacgtcggacttcctg
gcctacctgaacctctgggagtacgtcgccgagcagcagaaggcgttgtccggcaaccag
ttccggcgcatgtgccgcaccgagtacctgaactacctgcggctgcgcgagtggcaggac
atcttcagccagctgcgtcagctggccaagccgctcggcatctcgctgaacacgaacacg
gccccggccgacccgcagcgcgtgcacacgtcgctgatcgccgggctgctctcgcacatc
gggctcaaggacccggcgaagggcgactacctcggcgcgcgcggcgcccggttcggcgtg
ttcccgggctcggcgctgttcaagaagcagccgcgctgggtgatgtcggcggagctggtc
gagacgtcgcggctgtgggcgcgggtcaacgcgcgcatcgaacccgagtgggtggagccg
ctggccgggcacgtcgtcaagcggtcctattccgagccgcactgggaacgcaagcagggc
gcggtgatggcgatcgagaaggtgacgctgtacggcgtcccgctgatcgccgaccgccgc
gtcaactacggccggatcgacccggagctgtcgcgggcgctgttcatccggcacgcgctg
gtcgagggcgattggcagacgcggcaccacttcttcgccgagaaccgggcgctgctggag
gaggtcgaagacctcgagaaccgcgcgcggcggcgtgacatcctggtcgacgaccagacg
ctgtacgagttctacgacgcgcgggtcccggcggacgtcgtgtcggtgcgccacttcgac
agctggtggaagaaggcccggcacaccgaacccgacctgttgtcgttcgagaagtccatg
ctcatcaacgagtccgccggcggcgtccgcgagggcgactacccggactcgtggacgcag
ggcacgcaggtcttcaagctgacctaccagttcgagccgggcgcggacgccgacggcgtc
accgtgcacatcccgctgccggtgctcaaccaggtgacgccggacgggttcgactggcag
gtgccggggctgcgggcggaactggtcacgcagctgatcaagtcgctgccgaaggcggtg
cgccgcaacttcgtcccggcgccggacacggcccgggaagtcctttcgcgagtgtcccct
tcggacggtccgctgctggaggtgctcggccgcgagctgcgtgccctgcgcgggatcacg
gtgccgtacgcggactgggacctgtcttcggtgccggagcacctgaagatgacgttccgg
gtggtcgacgagcggggtcgccgcgtggccgagggcaaggacgtggcggagctgcagcgc
cgcctggccccgaaggtccgcgagacgatctccaaggcggccaacaccctggagaaggcg
ggcctgacgaagccgtcgttcggttcgttgccggaggtgttctcctcgcaccagcgtggg
cacgacgtcaaggcgtacccggcgctggtggacgagggcgcgacggtggcggtgcggctg
ctggacacgccggcccagcaggaacacgcgatgtgggcgggcacccggcggatgctgcgg
ctgaacctgaactcgccgatgaagttcatcacgcggtcgctgtccaattcgtcgaagctg
gtgctcaaccggaacccgcacggcagcgtggcggcgctgctcgaggactgcgtcgactgc
gcggtggacgccctgatggccgcgggcggcggcccggcgttcgacgagaccggcttcaag
gtgctgctggagaaggtccgggcgggcttgcacccggcggtgctggacgtgctgaccgag
gtggagaagatcctgcgcgcggcgaacgacgtcgaggtgcagctgtcctcgtcgcgcggc
ccggcggagtccttggcggacatccgggcccagctgacggcgctggtgtatccgggtttc
gtgacggagacgggcgcttcgcgactgcgcaacgtggtccggtacctgcagggaatttcc
cgacggctggagaagctggtttcggagccgacgcgcgacctgcagcgcacggcggacatc
gcgtggatccagggcgagtacgccgacgcgctggcttcgctgccaccgggaacgtcgtcc
ccggagctgcgcgaggtgcggtggatgatcgaggagctgcgggtttcgttcttcgcccag
acactggggacggcgcacccggtgtcgttgaagcggatcacgaaggccctggacgacgcc
ctggcctga
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