Amycolatopsis mediterranei RB: B737_7759
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Entry
B737_7759 CDS
T02804
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz00250
Alanine, aspartate and glutamate metabolism
amz00310
Lysine degradation
amz00350
Tyrosine metabolism
amz00650
Butanoate metabolism
amz00760
Nicotinate and nicotinamide metabolism
amz01100
Metabolic pathways
amz01120
Microbial metabolism in diverse environments
Module
amz_M00027
GABA (gamma-Aminobutyrate) shunt
amz_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
B737_7759 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
B737_7759 (gabD)
00310 Lysine degradation
B737_7759 (gabD)
00350 Tyrosine metabolism
B737_7759 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
B737_7759 (gabD)
Enzymes [BR:
amz01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
B737_7759 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
B737_7759 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
B737_7759 (gabD)
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GFIT
Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AGT88420
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All DBs
Position
complement(8675457..8676920)
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AA seq
487 aa
AA seq
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MSANTESGVVEAVGKELFIGGKWVAAQDGKTFPVVDPATGKELCHVADASPSDGVAALDA
AVAAQTEFAKMAPRERGEILRRAYELLMRRQEELALLMTLEMGKPLAESKGEIAYAAEFF
RWFAEEAVRIDGGYATAPNGAGRFLITKQPVGPTLLITPWNFPMAMGTRKIGPAIAAGCT
AVIKPAAQTPLSMLALAGILAEAGLPEGVLNVVTTSDSGGVMEPLIRDGRARKLSFTGST
GVGRKLLEQCADKILRTSMELGGNAPFLVFDDADMDAAIEGAMQAKMRNIGEACTAANRF
YVQRGVVDEFARRLTERMQALPMGRGTEKDVVVGPLIDEKAVDKVTELVKDATDRGARIL
TGGSGVDGPGHFYPATVLTDVPQEARLTHEEIFGPVAPITPFDTEEEAVAKANDTEFGLV
SYLFTSDLKRALRVSEALEAGMIGLNQGIVSNPAAPFGGIKQSGLGREGGSVGIDEFLET
KYIAVAL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaacaccgagtccggcgtcgtcgaggcggtcggcaaggaactgttcatcggc
ggcaagtgggtcgccgcccaggacggcaagaccttcccggtggtggacccggccaccggc
aaggagctttgtcacgtcgccgacgcctcgccgtcggacggcgtcgcggcgctggacgcc
gccgtcgcggcgcagaccgagttcgcgaagatggcgccccgcgagcgcggcgagatcctg
cgccgcgcctacgagctgctgatgcggcgccaggaggaactggcgctgctgatgaccctg
gagatgggcaagccgctcgccgagtcgaagggcgagatcgcctacgccgcggagttcttc
cgctggttcgccgaggaagccgtccgcatcgacggcggctacgcgaccgccccgaacggc
gcgggccggtttctcatcaccaagcagccggtcgggccgacgttgctgatcacgccgtgg
aacttcccgatggcgatgggcacccgcaagatcggcccggcgatcgccgccggctgcacg
gcggtgatcaagcccgccgcccagacgccgctgtcgatgctcgcgctggcgggaatcctc
gccgaggcgggactgcccgaaggcgtgctcaacgtcgtcacgaccagcgactccggcggc
gtgatggagccgctgatccgtgacggccgcgcccgcaagctctccttcaccggctcgacc
ggggtcggccgcaagctgctcgaacagtgcgccgacaagatcctgcggacgtcgatggag
ctgggcggcaacgcgccgttcctggtcttcgacgacgcggacatggacgcggccatcgag
ggcgccatgcaggcgaagatgcgcaacatcggcgaggcgtgcaccgcggcgaaccggttc
tacgtgcagcgcggcgtcgtcgacgagttcgcgcggcggctgaccgaacgcatgcaggcg
ctgccgatgggccgcggcaccgagaaggacgtcgtcgtcggcccgctgatcgacgagaag
gccgtcgacaaggtgaccgagctggtcaaggacgccaccgaccgcggcgctcggatcctc
accggcggctcgggcgtcgacgggccggggcacttctacccggccacggtgctcaccgac
gtcccgcaggaggcgcggctgacgcacgaggagatcttcgggccggtcgccccgatcacg
ccgttcgacaccgaagaagaggcggtggcgaaggcgaacgacaccgagttcgggctcgtt
tcctacctcttcaccagcgacctcaagcgcgccctgcgggtttcggaagcgctggaagcc
gggatgatcgggctcaaccagggcatcgtctcgaacccggcggcgccgttcggcgggatc
aagcagtccgggctcggccgcgaaggcggctcggtcggcatcgacgagttcctggagacc
aagtacatcgcggtcgccctgtga
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