Amycolatopsis mediterranei RB: B737_8745
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Entry
B737_8745 CDS
T02804
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amz
Amycolatopsis mediterranei RB
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amz03016
]
B737_8745
Enzymes [BR:
amz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
B737_8745
Transfer RNA biogenesis [BR:
amz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
B737_8745
Prokaryotic type
tRNA splicing ligases
B737_8745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGT89405
LinkDB
All DBs
Position
complement(9740683..9741873)
Genome browser
AA seq
396 aa
AA seq
DB search
MYTAVEGARVPIRMWADPASVEDQAMRQLHNVANLPWVHGVAVMPDVHYGKGATVGSVIA
MRDAVSPAAVGVDIGCGMSAVRTSLTASDLPDDLGKLRRRIESAVPVGFGLHKTPVNPAK
VHGVGGWDAFWKQFGELHTGVQELHDRAARQIGSLGGGNHFIEVCLEEGGAEEGRVWLML
HSGSRNIGKELAERHMAVARKLPHNADLPDRDLAVFVAGTPEMQAYRRDLFWAQEYAARN
RATMVALVKLALADVVPGTTFDDAISCHHNYVAEETYDGVELLVTRKGAIRAGSGDLGII
PGSMGTGSYIVRGLGNDSSFQSASHGAGRRMSRTKAKTLFTADDLAAQTAGVECRKDSGV
VDEIPAAYKDIETVIQAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtacaccgctgtcgaaggggcccgcgtcccgatccggatgtgggcggatcccgcttcc
gtcgaagaccaggccatgcggcagctgcacaacgtcgcgaacctgccgtgggtgcacggc
gtcgccgtgatgcccgacgtccactacggcaagggggccaccgtcggcagcgtcatcgcc
atgcgcgacgccgtctcgcccgccgccgtcggggtcgacatcggctgcgggatgagcgcc
gtccggacgtcgctcaccgcgagcgatctgcccgacgacctcgggaagctgcgccggcgc
atcgaaagcgccgtgcccgtcgggttcgggctgcacaagacgccggtgaacccggcgaag
gtgcacggcgtcggcggctgggacgcgttctggaagcagttcggcgagctgcacaccggc
gtccaggagctgcacgaccgggccgcgcggcagatcgggagcctcggcggcgggaaccac
ttcatcgaggtctgcctcgaggaaggcggtgccgaagagggccgggtctggctgatgctg
cactcgggttcgcgcaacatcggcaaggagctggccgagcggcacatggccgtcgcgcgc
aagcttccgcacaacgccgacctgcccgaccgcgacctcgcggtgttcgtcgcgggcacg
ccggagatgcaggcctaccggcgcgatctgttctgggcgcaggagtacgcggcgcgcaac
cgggccacgatggtcgcgctggtgaagctggcgctcgcggacgtcgtgccgggcacgacc
ttcgacgacgcgatctcgtgccaccacaactacgtcgccgaagagacctacgacggcgtc
gagctgctcgtcacccggaagggcgcgatccgcgccggatcgggtgacctcgggatcatc
ccgggcagcatggggaccggttcgtacatcgtccgcgggctgggcaacgactcgtcgttc
cagtcggcttcgcacggcgccgggcggcggatgtcgcgcaccaaggccaagacgctgttc
accgccgacgacctcgcggcgcagacggcaggcgtcgaatgccgcaaggactccggcgtg
gtcgacgagatcccggcggcctacaaggacatcgaaacggtgatccaggcccagacggac
ctggtcgaggtcgtggcgcacctcaagcaggtggtctgcgtcaagggctga
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