Nostoc sp. PCC 7120: all3526
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Entry
all3526 CDS
T00069
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ana
Nostoc sp. PCC 7120
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ana03016
]
all3526
Enzymes [BR:
ana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
all3526
Transfer RNA biogenesis [BR:
ana03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
all3526
Prokaryotic type
tRNA splicing ligases
all3526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Pellino_RING
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BAB75225
LinkDB
All DBs
Position
complement(4248850..4250031)
Genome browser
AA seq
393 aa
AA seq
DB search
MPYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
IATKEAIIPAAVGVDIGCGMSAIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKS
VANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVCLDTENQVWLMLHSGSRNIG
NQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVKGKGNAHSFCSCSHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDE
IPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgaaaagttagaaattgaaacacaagcacctgtattatcttgggcaaatcat
gaactaggttccgaagaaaccaagatggcaaaaaacgtggcatcgctaccatttgtattt
aaacacgtagcactaatgcctgatgttcatttaggaaaaggtgctttagttggttctgta
attgcgactaaagaagcaatcattcctgctgctgtgggcgtggatattggttgcggtatg
agtgcgattaaaacaccatttactagtgaacaattagaaggaaaactcaaaaaaattcgc
ctagatatcgaagccgcaattcccactggtttcaatgaaaataaagaagtagaaaaatct
gtggctaactggcaacgttggcgcgatttttcagacttacattctggtgtccaagactta
caaactaaagccatgagacaaatgggttctctaggcggcgggaatcactttttagaagtt
tgtctagatacagaaaaccaagtttggttaatgctgcactctggttcacgcaatattggc
aatcaacttgctcaatgtcatattagtacagcaaaagaattagcaaaactagcaggtaat
aaattacctgatcctgatttggcttattttatcgctggtacaccagaatttaaagcatac
tggaacgatttacaatgggcgcaagattatgcccgtgttaaccgtgatgtgatgatggcg
cgttttaaacgcattgttgaaaaacatatcgctggtggcaaattaactaaacctttatta
caggtaaattgtcatcataactacgccgaaaaggaagtacattttgacgagaatgtgtat
gtaactcgtaaaggtgcagtccgcgctcaaacagaagattatggcattattcctggttca
atgggagcaaagtctttcattgttaaaggtaaaggtaacgctcatagtttttgttcttgc
tctcatggtgctggtcgtttattatcaagaagtaaggcaaaaaatgtctatactcttgat
gatttaattgagcaaaccaagggcgtagagtgtcgtaaagatactggtgtgttagatgaa
attcctggtgcttataaacccattgatcaagtgatggaaaatcaagcagacttggttgaa
gttgtagctacactcaagcaagttgtttgcgtgaaagggtag
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