Nostoc sp. PCC 7120: alr0205
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Entry
alr0205 CDS
T00069
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ana
Nostoc sp. PCC 7120
Pathway
ana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
alr0205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ana03019
]
alr0205
03400 DNA repair and recombination proteins [BR:
ana03400
]
alr0205
Enzymes [BR:
ana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
alr0205
Messenger RNA biogenesis [BR:
ana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
alr0205
DNA repair and recombination proteins [BR:
ana03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
alr0205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
GerE
ResIII
HTH_38
HTH_24
HTH_5
MarR_2
MarR
HTH_20
HTH_7
DUF6115
HTH_11
HTH_IclR
Sigma70_r4_2
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BAB77729
LinkDB
All DBs
Position
221033..223189
Genome browser
AA seq
718 aa
AA seq
DB search
MLQYPNLEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQG
LTVVVSPLIALMQDQVEALRNNNISATFLNSSLNAYQVRSREEAILNGKVRLLYVAPERL
LSERFLPFLDLVKEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTA
TATDRVRADIIQQLGLKQPSIHLASFNRQNLYYEVRPKSKQAYAELLELIRDNEGSTIIY
CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK
PDVRLVVHFDIPRNLESYYQESGRAGRDGEASRCTIFFSFGDIKTIEWSIEQKTDPQEQL
IAKQQLRQMIDYAEGTDCRRTIQLGYFGERFPGNCGNCDNCRYPKPMQDWTIEAMKFLSC
VARCKERFGMLHIIDVLRGAKKDKIIQYEHDKLSTYGIGKDRTVDEWRTLGRSLLHQGLL
EQTSDGYSVLKLNALSWEVMKRQRQVFLSVPVAQKLSLIQESPKFEEAEALLHRLRSLRK
QLADEQSVPPYVVFHDSTLKLMVQVQPQNLLEFSKLSGVGSHKLAQYGEKFIAEIRAYRQ
EKNPQEKPVNLAPTASVVSDSEIQTLQLHQQGLSIAEIARKRKLSPATISTHLGKLIEKN
QPVDLNQLVPLEHQQKIWQVLEVLGDIALTPIKEQLGESYTFEEIRLVREKWRRQNKK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagtatcccaatctcgaacaggcgctaaaatatcacttcggttacgataacttt
cgtcccggacaacggcaaataattgaagatgcgctgcaaaatcgagatttaatggtagtg
atgcctacgggtggaggaaagtcgttgtgctttcagttacctgcactaatgaagcagggt
ttaactgtggtggtatcaccgttgattgctttgatgcaagaccaagtggaagcactacgt
aataataatatctctgccaccttcctcaatagtagtttgaatgcgtatcaggtgcgatcg
cgtgaggaagcaattctcaatggtaaggtaagattactttacgtcgccccagaacgtctc
ctcagtgaaagatttctgccatttctcgatttggtcaaagaaaaagtggggatatctatc
tttgcaattgatgaagcccattgtgtgtctgagtgggggcatgatttccgtccagaatat
cgccagttaaaatccctacgcaagcgttaccccaatgttcccgtccttgcccttaccgcc
acagccacagaccgcgtgcgtgctgatatcatccaacaactgggattaaagcaaccaagt
attcaccttgccagttttaatcgccaaaatctttattatgaagtccgccccaaaagtaaa
caagcttacgctgaattattagaattaattcgagataatgaaggttcaactattatttat
tgtttaactcgaaaaaaggttgaggaactaacatttaaactgcaaaaagataagatttcg
gctttgtcttatcatgccggattacctgatgatgagcgtagcaaaaaccaaacgcggttt
attcgggatgatgtgcgggtaatggtggcaacaatcgcctttggcatgggtattaataag
ccagatgtgcggttggttgtacattttgatattccgcgaaatttagagagttactatcaa
gaatcaggtagggctggcagagatggggaagcatcacgctgtacaatattttttagtttt
ggtgatattaaaaccattgaatggagtattgagcaaaaaacagaccctcaagaacagtta
attgccaaacaacaactgcggcagatgatagattacgctgaggggacagactgtcggcgg
acaattcaactaggttattttggtgaaaggtttccgggtaattgtggtaactgtgataat
tgccgttatcccaaaccgatgcaagattggacaattgaagcgatgaagttcctatcttgc
gtagcgcgttgtaaagaaaggtttgggatgctacacataattgatgtgttgcgaggggca
aaaaaagacaaaattattcaatatgaacacgataaactttccacctatgggattggcaaa
gatagaacggtggatgagtggcggactttaggaagatcacttttacatcaaggtttactg
gaacaaactagcgacggttactcagttttaaaattaaacgccctcagttgggaagtgatg
aagcgacaacgccaagtgttcctttctgttcctgtggcgcaaaagctgagtttgatacag
gagagtcccaaatttgaagaagcagaagcattattacacagattgcgatcgctacgtaaa
caacttgctgatgaacagtctgtaccgccttacgtcgtcttccacgattccacattaaaa
ttaatggtacaggtgcaaccccaaaacttactcgaattctctaaactctctggcgttggt
agtcacaaattagcccaatatggtgagaaattcattgccgaaattcgcgcctaccgtcaa
gaaaaaaatcctcaagagaaaccagttaatcttgcacctacagccagtgtagtttccgat
agcgaaatacagacattacaattacatcaacaaggcttgagtattgccgaaatagcccgc
aaacgcaaactcagcccagcaacaatttccacccatttaggtaaactgattgagaaaaat
cagccagtcgatttaaaccaactcgttcctttagaacatcaacagaaaatttggcaagtg
ctagaagtgcttggcgatatagctttaacacccattaaagaacagttaggtgaaagctat
acttttgaagaaattcgcttagtcagagaaaaatggcggcgacaaaacaaaaagtaa
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