Nostoc sp. PCC 7120: alr1223
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Entry
alr1223 CDS
T00069
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ana
Nostoc sp. PCC 7120
Pathway
ana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
alr1223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ana03019
]
alr1223
03009 Ribosome biogenesis [BR:
ana03009
]
alr1223
Enzymes [BR:
ana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
alr1223
Messenger RNA biogenesis [BR:
ana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
alr1223
Ribosome biogenesis [BR:
ana03009
]
Prokaryotic type
rRNA helicases
alr1223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAB73180
UniProt:
Q8YXJ0
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All DBs
Position
1443660..1445201
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AA seq
513 aa
AA seq
DB search
MNLSFPELGISQERVEHLEKLGFTAPTNIQAQAIPQLLSGRDVVGQSQTGTGKTAAFSLP
ILERLDPQQKAVQAIVLTPTRELAIQVHDAMAQFVGNSGLRTLAIYGGQSIDRQMLQLKR
GVHIVVGTPGRVIDLLERGNLKLDQVKWFVLDEADEMLSMGFIDDVEKILSQAPQDRQTA
LFSATMPPSIRMLVNKFLRSPVTVTVEQPKATPNKINQVAYLIPRHWTKARALQPILEME
DPETALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLTRFRSRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAITLVQPFERRKQQIFERH
VRQNWQLLSIPTRAQIEARHILKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSTDAEIPEEVASTPKPKLGGKRREFSGDRGRSNWNKSDNNNSDDERR
GTPKPKLRTGRRETSATPSNPKLGSPAARESAS
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacttatcgtttcccgaactaggaatttcccaagaacgcgtagaacacttagaaaaa
cttggttttactgcaccaacaaacattcaagcccaagctatcccccaactgttgtcagga
cgggatgtagttggtcaatcacaaacaggtacaggtaaaacagcagcattttcactgcca
attttagagcgattagatcctcaacaaaaagcagtacaagccatagttttaaccccaacc
cgcgaattagcaatccaagtccacgatgcaatggcgcaattcgttggtaacagtggatta
cggactttagcaatttacggtggtcaatcaattgaccgtcaaatgctacaactcaaacgc
ggcgtgcatatcgtcgtcggtacaccagggcgagtaattgacctactagaacggggtaac
ctgaagctagatcaagtcaagtggtttgttttggatgaagccgatgaaatgttaagcatg
ggctttatcgacgatgtggagaaaattctttctcaagcaccccaagaccgtcagacagct
ttattctcagctaccatgccaccatcaattcggatgttggtcaacaagtttttgcgatcg
cccgtcacagtcaccgtcgagcagccaaaagccacccccaataaaatcaatcaggtagct
tatctcatcccccgtcactggacaaaagccagagccttacagccaattctggaaatggaa
gatccagaaacagctttaatctttgtccgcaccagacgtacagccgccgaactcaccagc
caactgcaagcagccggtcacagtgtagacgaatatcatggtgacctgtcccaacaagca
cgggaacggttattaactcggttccgcagccgtcaagttcgctgggtagtagcaactgac
attgctgcacggggtttagatgtcgatcaactatctcatgtgatcaactacgacctaccc
gatagcgtcgaaacctacgtccaccggatcggtcgtactggtcgtgctggtaaagaaggt
acagcaattaccttagtacaaccctttgagcgtcgcaaacagcaaattttcgagcgtcat
gtccgccaaaattggcaattgctttccattcccacacgggcgcaaatcgaagcacgccac
atcctgaaattgcaagagcaagtcagagaagccttagctggtgagcgtttagcttccttc
ttacccattgtcagcgaattgatcgaaaaatatgatgctcaagcgatcgccgcagcagcg
ctacaaatcgcttacgatcaaactcgtcctgcttggttaagtacagatgccgagattccc
gaagaagtcgcatctactcctaaacccaaactaggcggtaagcgtcgtgagttttccggt
gacagaggtcgttccaattggaacaaatctgacaataacaacagcgacgacgaaagacgc
ggtactcccaaaccaaaattacggactggccgtcgtgaaacttccgctacacctagcaat
cctaagttgggttcacctgctgctagagaatcagcttcttag
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