Nostoc sp. PCC 7120: alr1595
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Entry
alr1595 CDS
T00069
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ana
Nostoc sp. PCC 7120
Pathway
ana03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
alr1595 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ana03021
]
alr1595 (rpoC1)
03400 DNA repair and recombination proteins [BR:
ana03400
]
alr1595 (rpoC1)
Enzymes [BR:
ana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
alr1595 (rpoC1)
Transcription machinery [BR:
ana03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
alr1595 (rpoC1)
DNA repair and recombination proteins [BR:
ana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
alr1595 (rpoC1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF8118
LPD11
Motif
Other DBs
NCBI-ProteinID:
BAB77961
UniProt:
P22704
Structure
PDB
PDBj
LinkDB
All DBs
Position
1870588..1872465
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AA seq
625 aa
AA seq
DB search
MRPAQTNQFDYVKIGLASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKG
IPSYISILLDMPLRDVEQIVYFNSYVVLSPGNAETLTYKQLLSEDQWLEIEDQIYSEDSQ
LQGVEVGIGAEALLRLLADINLEQEAESLREEIGSAKGQKRAKLIKRLRVIDNFIATGSK
PEWMVMTVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIHQCGLPREMAIELFQPFVINRLIRSGMVNNIKAAKKLISRNDPSVWDVLE
EVIEGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLASNNILSPATGRPIITPSQDMVLGAYYLTAENPGATKGAGKYFASLDD
VIMAFQQEQIDLHAYVYVRFDGDVESDQPDTEPVKVTTNEDGSRTVLYKYRRVREDAQGN
VISQYIYTTPGRVIYNKAIQEALAS
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgagacccgcccaaactaatcagtttgactacgttaaaatcggcttggcatcaccagaa
cgtattcgccaatggggtgagcgtacattacctaatggtcaggtcgtaggtgaagtcacc
aaaccagaaacgattaattaccggactctcaagcctgaaatggatggcttattttgtgag
cgcatttttggccccgcgaaagattgggaatgccattgcggtaagtataagagagtccgc
catagaggcattgtctgtgagcgttgtggcgtggaagttaccgagtcacgggtacgccgt
caccgcatggggtacattaaactcgctgccccagtagcccacgtttggtatctcaaaggg
attcctagctatatttctattctgctagatatgcctttgcgggatgtggagcagattgtc
tatttcaactcttatgttgttctcagtcccggtaatgccgaaaccctaacctacaagcag
ctactgagtgaagatcaatggttagaaattgaagaccaaatctatagtgaagattctcaa
ttgcaaggtgtagaggtaggtatcggtgctgaagcactgttgcgcttgctggctgatatt
aatttagagcaagaagcggaaagtctacgggaagaaattggcagtgctaaaggacaaaaa
cgagcaaaacttattaagcgcctgcgggtaattgataacttcatcgctaccggttctaag
ccagagtggatggtgatgacagtgattcctgtaatccctccagatttgcgcccaatggtg
cagttagatggtggacggtttgctaccagtgacttgaatgatttatatcgtcgggtaatt
aaccggaataatcgtttggcacgactgcaagagattcttgcaccggaaattatcgtgcgg
aacgaaaagcggatgctgcaagaagcagtagacgctttgattgacaacggtcgtcgggga
cgtactgtggttggggcaaacaaccgacccctaaaatctttatcagacattattgaaggt
aagcaaggacgtttccggcaaaacttgttaggtaaacgggttgactactctggacgttct
gtaattgtggtcgggccaaagctgaaaattcaccagtgcggcttgcccagagaaatggca
attgaactattccagccatttgtcattaatcgtctgattcgcagtggcatggtgaataac
atcaaagctgcgaaaaagttaatctctcgcaatgaccccagtgtttgggatgtcctggaa
gaagtgattgaaggacacccagtcatgcttaaccgtgcgcctaccctacaccgtttgggt
attcaggcttttgaaccaattttggtggaaggtcgagccattcaactccaccccttggtg
tgtcctgcatttaacgctgactttgacggcgaccaaatggcagtacacgtccccctatcc
ttggaaagccaggcagaagcaaggttgttaatgcttgcttccaacaatatcctctcacca
gctacaggtagaccaattatcacacctagccaagacatggtattgggggcttattaccta
actgcggaaaacccaggtgctaccaaaggtgcgggtaagtattttgcttctctggatgac
gtgattatggccttccagcaagagcaaattgacttacacgcttatgtctacgtgcggttt
gatggtgatgtagaatctgaccaaccagatacagaacctgtgaaggtgacaactaacgaa
gatggtagccggactgtactatataagtaccgccgagtcagggaagacgctcagggaaat
gtaatttctcagtatatatacaccactccaggtcgcgttatttacaataaagcgattcaa
gaagcacttgccagttag
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