Nostoc sp. PCC 7120: alr4320
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Entry
alr4320 CDS
T00069
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ana
Nostoc sp. PCC 7120
Pathway
ana03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
alr4320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ana03400
]
alr4320
Enzymes [BR:
ana01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
alr4320
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
alr4320
DNA repair and recombination proteins [BR:
ana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
alr4320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
BAB76019
UniProt:
Q8YP80
LinkDB
All DBs
Position
5172791..5173642
Genome browser
AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLNQLTLNRKITGGDVLLHRTIAHPFSVGDFLNGITGSTISTWHRRGK
YLLAELSASPSTTSIPWLGVHLRMTGQLLWLNQDEPLHKHTRVRIFFEEEQELRFVDQRT
FGQMWWVPPGIAVESVITGLAKLAVDPFSPEFTVEYLANKLHNRRRPIKTALLDQSVVAG
LGNIYADEALFKSGVLPETLCTEVQLKQIKLLRTAIIQVLETSIEAGGTTFSNFLNVKGV
NGNYGGVAWVYNRAGEPCKVCGDVIQRIKLGGRSSHFCRQCQV
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattgcctgaagttgaaacagtgcggcggggtttaaaccaactaaccctgaac
cgaaaaattacgggtggagatgtgttgcttcatcgcaccatcgcccaccctttttctgtt
ggtgattttttgaatgggattaccgggagtaccattagtacttggcatcgtcgcggtaaa
tatctcctcgcggaactctctgcgtctccctccactacttccatcccttggctaggtgtg
catctgaggatgactggtcaattactttggctaaaccaagatgagcctttacacaagcat
acgcgggtaagaatattttttgaggaagagcaggaattacgctttgttgaccagcgaact
ttcggtcaaatgtggtgggttccaccaggaatagctgtagaaagcgtgattactggttta
gctaaacttgctgtagatcccttttcacctgaatttactgttgagtacttagcaaataag
ctgcataatcgtcgccgtcccatcaaaaccgccctattagaccagtcggttgttgcagga
ttaggtaacatctatgctgacgaagcattgtttaaaagtggtgtgttaccagaaactcta
tgtacagaagtgcagttaaagcaaattaagcttttgcgaacggcgattattcaagttttg
gaaaccagtattgaggctggtggtacaacttttagtaatttcctcaacgttaaaggggtc
aatggtaattatggtggtgtcgcctgggtgtacaatcgcgcgggggaaccatgtaaagtt
tgtggtgatgtaattcagcgcatcaagttaggtggaagatccagccatttttgccgccag
tgtcaagtttag
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