Nostoc sp. PCC 7120: alr4718
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Entry
alr4718 CDS
T00069
Symbol
crhC
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ana
Nostoc sp. PCC 7120
Pathway
ana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
alr4718 (crhC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ana03019
]
alr4718 (crhC)
Enzymes [BR:
ana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
alr4718 (crhC)
Messenger RNA biogenesis [BR:
ana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
alr4718 (crhC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HI1480
P-loop_SecA
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
BAB76417
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All DBs
Position
5624029..5625309
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AA seq
426 aa
AA seq
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MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLAGAQTGTGKTASFTLPLL
HLLSQDSLKSASNASSPIRALILTPTRELAAQVESSVRDYGKYLKLNSMVMFGGVSINPQ
KQRLKGRVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLLP
KQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLAH
LIRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQV
LVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLLA
DIEKLIEKRLPFELVAGIGANSQAKPEPTQDERKQKPKDSQHQPRSAAQGVPKKSGKKRL
TNSGKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtctttttctcatctcggcttgtccaatgaaattatcaatgctgttactgagttgggg
tacaccaaacccacacccatccagatgcagtctattcctgctgtcttatcaggacgagat
ttgctagctggcgctcaaactggaactgggaaaactgccagctttactctccccctccta
catttattatcccaagatagtcttaaaagcgcctccaatgcttcctcacccattcgggcg
ctaattcttaccccgactcgtgaactcgccgcacaggtggagtcaagcgtgcgtgactac
ggcaagtacttgaagctgaactcaatggtgatgtttggtggagtcagcattaatccccaa
aaacagcgtttaaagggtcgtgtagatattctggttgctaccccagggcgactgctagac
catgtgcagcagggaacggtaaacctttcacagattgagattctggtgctggatgaagcc
gaccggatgttggatatgggctttattcgtgatatccgtcgtatcctctccctgttgccc
aaacagcgacaaaacttgctattcttcgctacattctcagacaaaatcaaggaactcgcc
gccggtctactgaatcgcccgcagatgatcgaagtagcacgccgtaacgttacagccgat
actgtgacacaaaaagtctacaaaatagagcgcgatagaaaacgagatttactggctcac
ctgattcggaaagataattggtatcaagtactagtatttactcgtaccaagtatggtgct
gaccgtctagttaaacaattaggccatgagcgcattcaagctctagctatccacggtaat
aagagccagtcggcgcgtacccacgctctggcaaagttcaaaaatggtagtttacaagtt
ttagtagcaactgacattgctgcacgaggactggacatcagcgaattgccttatgtggtc
aatttcgatttgccctatgtaccagaagattatgttcatcgtattggtcgcactggtcgc
gctggtgcatcaggtgaggctgtatcgctggtgagcgccgatgaatatcatttgttggca
gatattgaaaaactgattgaaaagcgattgccttttgaattggtagcgggtattggagct
aattcccaagctaaacccgaaccaactcaggatgaacgcaagcaaaaacccaaagatagt
cagcatcagcctcgctctgctgctcaaggtgtgccaaagaaatcagggaaaaaacgttta
actaattctggaaaaaggtaa
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