Anabaena sp. 90: ANA_C12216
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Entry
ANA_C12216 CDS
T02341
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anb
Anabaena sp. 90
Pathway
anb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ANA_C12216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anb03400
]
ANA_C12216
Enzymes [BR:
anb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ANA_C12216
DNA repair and recombination proteins [BR:
anb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ANA_C12216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFW94953
UniProt:
K7WHG1
LinkDB
All DBs
Position
chANA01:2489001..2492516
Genome browser
AA seq
1171 aa
AA seq
DB search
MAFSSIVRALARSPLTAELITKLNKQRELRLNGISRLPKGLVASALANYEDQDLCVVCAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNGQLQKQKT
AIIATVGALQPHLPPPEAFKSFCVTLEKGMEFDLDGFGEKITLLGYERVPLVETEGQWSR
RGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSALDKVEKITLTPTSFAPIISDA
LKDLPNVETFQGISSELGTLEGSRRFLGLAFAKPASLLDYLSENTLVAIDELEQCYAHSD
RWVENANSQWSVGEKHLEDHFLQPPIIYLPNASPVQLSVALPKIHRNFDECIAEIGNFRK
LYLSELSEENSGLNLASRPLPVTPHQFAKLGETIRKERERNFAVWILSAQPSRSVSLLQE
HDCPAQFIPNPRDYQAIDKLQINHIPIALKYSGLAELEGCILPSYRLVIVTDREFYGQHS
LANFGYVRKRRQATSKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYLVVQYA
DGLLRVAADQVGSLSRFRTGGDQAPELHKMSGKAWENTKSKVRKAIKKLAVDLLKLYAAR
SQQQGFSYPHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKT
EVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPINVGLLNRFRSAEEKRNI
QKRLATGELDIVVGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLS
ATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYV
VPRVDGIEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGL
DIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQE
FTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKVE
DTQVDLNLTAFIPATYIPDLDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVPASQL
LRVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLTPTMKARFVYSPGKVT
ARGLGVFKADQQLQTLIDTFVKMQGAISETP
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggccttttcttctattgtgcgtgctttggcgcgatcgcctcttaccgccgaactaatt
accaaactcaacaaacaacgggaattgcggttaaatgggatttctcgtctccccaaggga
ctggtagcttcagcattagcaaactatgaagatcaggatttgtgcgtcgtctgtgccacc
ctagaggaagctggccgggttttcgcccaaatggaagcaatgggctggaaaactgtgcat
ttttacccaacttctgaagcttctccctatgaaccttttgaccctgaaaatgagttaagt
tggggtcaaatgcaggttttagcggatttggtaaatggtcagttgcaaaagcaaaaaact
gccataattgccactgtgggggcattacagccacatttgccacctccggaagcgtttaaa
tcattttgtgtaaccttagaaaaagggatggaatttgatttagatgggtttggggaaaaa
atcactcttttgggatatgaacgagttcctctggtggaaactgaggggcaatggagtaga
cggggggatattgtggatgtgtttccggtgtcctcagagttgcctgtgcgcttggaatgg
tttggcgacgaaattgaacaaattcgagaatttgaccccgctacccaacgttctgccttg
gataaggtggaaaaaattactctcaccccgacaagttttgcacctattatttcagatgca
ctgaaagatttaccaaatgtagagacgttccagggaatttcttcagagttaggaacatta
gaaggaagtcggcggtttttggggttggcttttgcaaaacccgcttcattattagattat
ttatctgaaaatactcttgtcgccattgatgaactagaacaatgttatgctcatagcgat
cgctgggtggaaaatgctaatagtcagtggtcagtaggggagaagcatttagaagaccat
tttttgcaaccaccgataatttatcttccaaatgcttcgccagtacagttgtcagttgca
ttaccgaaaattcatcgaaattttgatgagtgtatagcggaaattggcaattttaggaag
ttatatttatcggaattatcagaagaaaatagtggactgaatttagctagtagaccttta
cctgttacacctcatcaatttgcaaaattaggggaaacaattagaaaagaacgcgaacgc
aattttgcagtttggatactttcggctcaaccttcccgttctgtttctcttctgcaagaa
catgattgtcccgcgcagtttattcccaatcctcgtgattatcaagctattgataaactg
caaattaatcatattccaattgcccttaaatattccggtttagcagaattagaaggttgt
attttaccttcttatcggttggttattgtcaccgatagagaattttatggacaacattcc
ttagctaattttggctatgtccgcaaacgtcgtcaagcgacatctaaacaagttgatcct
aacaaattacgtcagggagattatgtagttcatcgtagtcatggaattggtaaatttgtc
aaattagaaagtctgacaattaatgatgaaacccgtgattatttagttgttcaatatgca
gatggtttgttaagagttgcggctgaccaagttggttctttatctcgtttccgcactggt
ggagatcaagccccagaattacacaaaatgagcggaaaagcttgggaaaatacgaagagt
aaagttcgcaaagccattaagaaattagcggtagatttattaaaattgtatgcagcccgt
tctcaacaacagggtttttcctatcctcatgatatgccttggcaagaagaaatggaagat
tcttttccttaccaacctaccacagatcaactcaaagcggtacaagatgtgaaacgggat
atggaaagtgaaagaccgatggataggttagtatgtggagatgtgggttttgggaaaaca
gaagtagcaattcgggcgatttttaaagctgttaccgcaggaaagcaagttgcactttta
gccccaacaacaattttaactcaacaacattatcacacaattaaagaacgttttgcccct
tatcctataaatgtaggtttattgaatcggtttcgcagtgcggaagaaaaacgtaatatt
caaaaacgactggctacgggagaattagatatagttgtggggacgcatcaattattaggt
aaaagtgtccaatttaaagatctaggacttttagtaattgacgaagaacaaagatttgga
gttaatcaaaaggaaaaaatcaaaagcttaaaaactcaagttgatgttttaactctttct
gcaactcccattcccagaaccttatatatgtcattgtcgggaattcgggaaatgagttta
attaccacaccacctcccaccagaagaccaattcaaacccatctttcaccgctcaactcc
gatgttattagaagtgcaattcgacaagaattagatcgaggtggacaagtattttatgta
gttccccgagtagacggaattgaagaaaccacgacaaaattgcgagaaatggttcctgga
ggcagatttgcgatcgctcatggtcaaatggacgaaagcgagttagaatcaactatgctc
acttttggcaataatgacgctgatattcttgtttgtacgacaattattgaatctggttta
gatattccgcgagttaacacaattttaattgaagatgctcaccgttttggtttatctcaa
ttatatcaattacggggtcgggtaggacgggcaggaattcaagctcacgcatggttattt
taccccaaacaacgagaattatctgatgctgctagacaaagattaagagcaattcaagaa
tttactcaactcggttctggatatcaattagcaatgcgagatatggaaattcgcggggtg
ggaaatttgctaggtgcagaacaatctggtcaaatggatgtaattggctttgacttatac
atggaaatgttagaagaagcaattcgagaaattagaggtcaagaaatacccaaagttgaa
gacacccaagttgaccttaatctcaccgcatttattcctgcaacctacattcctgatctt
gatcaaaaaatgagtgcttatcgggctgtagctacagtaaaatcaaaatatgaactcaaa
caaattgctgctgaatggactgatagatatgggactattccagttccagctagtcagtta
ttacgagttatggaactcaaacaattagctaaaaatctcggatttagccgcattaaacca
gagaataaacagcacattgttttagaaacaccaatggaagaaccagcttggaatctctta
gcagaaaacctcactcccacaatgaaagcaaggtttgtttattctcctgggaaggtaaca
gcgagaggtttaggagtgtttaaagcagaccaacaattgcagactttaatagatactttt
gtaaaaatgcaaggggcaatttctgaaactccttaa
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