Ancylobacter sp. TS-1: GBB76_02220
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Entry
GBB76_02220 CDS
T06239
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
anc
Ancylobacter sp. TS-1
Pathway
anc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBB76_02220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anc03019
]
GBB76_02220
03009 Ribosome biogenesis [BR:
anc03009
]
GBB76_02220
Enzymes [BR:
anc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GBB76_02220
Messenger RNA biogenesis [BR:
anc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GBB76_02220
Ribosome biogenesis [BR:
anc03009
]
Prokaryotic type
rRNA processing factors
GBB76_02220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Ogr_Delta
Motif
Other DBs
NCBI-ProteinID:
QFR32024
LinkDB
All DBs
Position
complement(461330..464068)
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AA seq
912 aa
AA seq
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MANKMLIDATHPEETRVVVVRGSRVEEFDFEAANRKPLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLAEEERQQRRDAEAEDEDKPKGRVRRPRGAA
RSADTEESVSEAAAPEDGDGEAAAPARRSRRRPSSSDDEGGGEVEEIAGEEEIVDEVGSD
DALEEVPERAAPRGRARTYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVL
MPNTARGGGISRKITSAEDRRRLKEVASDLEVPEGMGVILRTAGANRTKPEIKRDFEYLL
RLWENVRELTLGSTAPSLVYEEGSLIKRSIRDLYNKDIDEVLVAGEEGYREAKDFMRMLM
PSHAKNVKVYKDLQPVFTRFGVESQLDAMFLPQVQLRSGGYLVINPTEALVSIDVNSGRS
TREHNIEDTALKTNLEAAEEVARQLRLRDLAGLVVIDFIDMDEKRNNRAVERKLKDCLKN
DRARIQLGRISHFGLMEMSRQRIRTGVLESSTEVCPHCGGTGHVRSSPSVALQLLRAAED
MLQRSNTHNLVVRTRAENALYVLNHKRAHLHELETRFGVLITISADPTLTGLTPFAIDKG
EAVLNPIPLPRAPELVIEPEDEIVIADELDEAEEEAAAPSRPQPAAAASGEGPGDAQGDA
LGDGGGRRRRRRRRRRRGAGPNGENGQRNGENGTDTAGIEFEDDGEGDEDADGDADTAAE
APAAQAPAEAYVTETTADDASAEAPAPVAELAAAEAPAEDAPAEDVPAEEARPRRGRRGG
RRTRGGKAGEDTGTEAVAEAATEAAAPEAVATEAAAVEAAPAPEAAPATEAKPRRRRSTV
REPAPVVSAPVEVPAEAAEPAPVESTSAEPFAEAPAEEPAAVSAPEAAPAPADDDPNRPR
RTGWWQRKIFGE
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgcttatcgacgccacccatcccgaggagacccgggtggtggtggtg
cgcggcagccgagtcgaggaattcgacttcgaggccgccaaccgcaagccgctgcgcggc
aacatctacctcgccaaggtaacgcgggtagagccttcgcttcaggccgccttcatcgag
tatggcggcaaccggcatggcttcctcgccttcagcgagatccatcccgactactaccag
atcccggtcgccgaccgtcaggcgctgctcgccgaggaagagcgccagcagcggcgcgac
gccgaggcggaagacgaggacaagcccaagggccgcgtccgccgcccgcgcggcgccgcc
aggagcgccgacaccgaggagagcgtctccgaggccgcagcgcccgaggatggcgacggc
gaggccgccgcgcccgcgcgccgctcgcgtcggcgtccgtcctcctccgatgacgagggt
ggcggcgaggtcgaggagatcgccggcgaagaagagatcgtcgacgaggtcggctcagac
gacgcgctggaggaagtgcccgagcgcgccgccccgcgtggccgcgcccgcacctacaag
atccaggaagtgatcaagcgccggcaggtgatgctggtgcaggtcgtcaaggaagagcgc
ggcaacaagggcgcggcgctcaccacctatctgtcgctcgccggccgctattcggtgctg
atgcccaacaccgcgcgcggcggcggcatctcccgcaagatcacctccgccgaggaccgc
cgccggctgaaggaggtcgcctccgacctcgaagtgccggagggcatgggcgtcatcctg
cgcaccgccggcgccaaccgcaccaagccggagatcaagcgcgacttcgagtatctcctg
cgcctgtgggagaatgtccgcgagctgacgctgggttcgaccgcgccgtcgctggtctat
gaggaaggctcgctgatcaagcgttcgatccgcgacctctacaacaaggacatcgacgag
gttctggtcgccggcgaggaaggctatcgcgaggccaaggacttcatgcgcatgctcatg
ccgagccatgcgaagaacgtgaaggtctacaaggacctgcagccggtcttcacccgcttc
ggggtggagagccagctcgacgcgatgttcctgccgcaggtgcagctgcgctcgggcggc
tatctcgtcatcaacccgaccgaggcgctggtctccatcgacgtgaactccgggcgctcg
acccgcgagcacaatatcgaggacaccgcgctcaagaccaacctcgaagccgccgaggaa
gtcgcccgccagctgcgcctgcgcgatctcgcgggcctcgtcgtgatcgacttcatcgac
atggacgagaagcgcaacaaccgggcggtcgagcgcaagctcaaggactgcctgaagaac
gaccgcgcccgcatccagctcggccgcatctcgcatttcggcctgatggagatgagccgc
cagcgcatccgcaccggcgtgctggaaagctcgaccgaggtctgcccgcactgcggcggc
accggccatgtgcgctcctcgccctccgtcgcgctgcagctcctgcgcgccgccgaggac
atgctccagcgctccaacacgcataacctcgtggtccgcacgcgcgccgagaacgcgctc
tacgtgctcaaccacaagcgcgcgcatctgcacgagctggagacccgcttcggcgtgctc
atcaccatctcggccgacccgacgctgaccgggctgacccccttcgccatcgacaagggc
gaagcggtgctgaacccgatcccgctgccgcgcgcgccggaactggtgatcgagcccgag
gacgagatcgtcatcgccgacgagctggacgaggccgaggaggaggctgcggccccgagc
cgtccccagccggcggccgccgcgagcggcgaaggcccgggcgacgcccagggtgacgcg
ctgggcgatggcggcggacgccgtcgccgccggcgtcgccggcgtcggcgcggtgccggc
cccaatggcgagaacggccagcgcaacggcgagaacggtaccgataccgccggcatcgag
ttcgaggacgacggcgagggcgacgaggatgcggatggcgacgcggacaccgccgccgag
gctcccgccgctcaggcgcctgccgaggcctatgtgaccgagacgaccgccgacgacgcc
agcgccgaggctcccgcgccggtcgcggaattggcggcggcggaagctcctgccgaggac
gctcccgccgaggacgtcccggccgaggaggcgcgtccgcgccgtggccgtcgcggcggc
cgccgcacgcgtggcggcaaggccggcgaggacaccggcaccgaggccgtcgcggaagcg
gcgaccgaggctgccgcccccgaagcggtcgcgaccgaggctgcggcggtggaagccgcc
cccgcgccggaggcggcacccgccaccgaagccaagccgcgccggcgtcgctccacggtg
cgcgagcccgcgccggtcgtgagcgcgcctgtcgaggttccggccgaggctgccgagccg
gcgccggttgagtcgacctctgccgagccgttcgccgaggcccccgccgaagagccggcg
gcggtttccgctcccgaggcggcgcctgcaccggccgatgacgaccccaaccgtccgcgc
cgcaccggctggtggcagcgcaagatcttcggcgagtga
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