Ancylobacter sp. TS-1: GBB76_11470
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Entry
GBB76_11470 CDS
T06239
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
anc
Ancylobacter sp. TS-1
Pathway
anc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBB76_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anc03019
]
GBB76_11470
Enzymes [BR:
anc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GBB76_11470
Messenger RNA biogenesis [BR:
anc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GBB76_11470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Utp25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QFR33686
LinkDB
All DBs
Position
2438531..2440018
Genome browser
AA seq
495 aa
AA seq
DB search
MKESYLTSFNELGLAEPILKALAEANHTTPTPIQIQAVPQVLAGRDLIGIAQTGTGKTAA
FALPILQHLVTNRFRPERRSARALVLSPTRELSGQILESFRLYGKHVRPSTALAIGGVPI
GRQARALAGGVDVLVATPGRLVDLLENNAVRLDMVEVLVLDEADQMLDMGFIHAIRAICA
RLPAKRRNLFFSATMPREIEKLADSLLTNPVRVAVTPVAKTADRVEQKVMFTDRAGKPNL
LVELLSEPDMDRALVFSRTKHGADRVVKGLAGAGIAAEAIHGNKSQPQRERALAAFRQGV
VKVLVATDIAARGIDVPGVSHVINYDLPNVPESYVHRIGRTARAGREGIAVSLCDGEERA
FLRDIERLIKITIPSVDRRGESRREGAPRLEGFRSDGPREGDRRDGVRRDGGRPPRGPAG
ERGPREGERSARPFPPRGPRPEGRPERAPQDGPRRDEFRAEGHRHEGGRPDAVRREAPAR
EGQRPPRRRSYRAAP
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatcctacttgaccagtttcaacgaactcggcctcgccgagccgatcctgaaa
gccctcgcggaagcgaaccacaccacccccaccccgatccagatccaggccgtgccgcag
gtgctggccgggcgcgatctcatcggcatcgcccagaccggtaccggcaagaccgccgcc
ttcgcgctgccgatcctgcagcacctcgtcaccaaccgcttccgcccggagcgccgctcg
gcgcgcgccctggtgctgagcccgacccgcgagctttccggccagatcctcgagagcttc
cggctgtacggcaagcatgtgcgtccctcgaccgcgctcgccatcggcggcgtgccgatc
ggccggcaggcgcgtgcgctggccggcggcgtcgacgtgctggtggccacccccggccgc
ctcgtcgacctgcttgagaacaacgccgtccggctcgacatggtcgaagtcctcgtcctc
gacgaggccgaccagatgctcgacatgggcttcatccacgccattcgcgccatctgcgcc
cggctgccggccaagcgccgcaacctgttcttctcggcgaccatgccgcgcgagatcgag
aagctggcggattcgctgctgaccaatcccgtccgcgtcgccgtgaccccggtcgccaag
accgccgatcgcgtcgagcagaaggtgatgttcaccgaccgcgcgggcaagccgaacctg
ctggtcgaactgctctccgagccggatatggaccgcgccctcgtcttctcccgcaccaag
cacggcgccgaccgtgtggtgaagggtctggccggggccggcatcgccgccgaggcgatc
cacggcaacaagtcgcagccgcagcgtgagcgggcgctggccgccttccgccagggcgtc
gtcaaggtgctggtggcgaccgacatcgccgcgcgcggcatcgacgtgccgggcgtcagc
cacgtcatcaattacgacctgccgaacgtgccggaaagctatgtccaccgcatcggccgc
accgcgcgcgccggccgcgagggcatcgccgtctcgctgtgcgacggcgaggagcgcgcc
ttcctgcgcgacatcgagcggctgatcaagatcaccattccctcggtcgaccgccgtggc
gagagccgccgcgaaggcgccccgcgcctcgaaggcttccgttcggacggcccgcgcgaa
ggcgatcgccgtgatggtgtgcgccgcgatggcggccgtcccccgcgcggcccggccggc
gagcgcggcccccgcgagggcgagcgctccgcccgcccgttcccgccgcgcggcccgcgt
ccggaaggtcgccccgagcgcgccccgcaggacggcccgcgccgtgacgagttccgcgcc
gaaggccatcgccatgaaggcgggcggcccgacgccgtgcgccgcgaggcgcccgcgcgt
gaaggccagcgcccgccccggcgccggtcctaccgcgccgcgccctga
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