Ancylobacter sp. TS-1: GBB76_16655
Help
Entry
GBB76_16655 CDS
T06239
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
anc
Ancylobacter sp. TS-1
Pathway
anc02020
Two-component system
anc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
anc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GBB76_16655 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GBB76_16655 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anc03021
]
GBB76_16655 (rpoN)
Transcription machinery [BR:
anc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GBB76_16655 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_3
PP_kinase_C
Motif
Other DBs
NCBI-ProteinID:
QFR34604
LinkDB
All DBs
Position
3556756..3558348
Genome browser
AA seq
530 aa
AA seq
DB search
MSLSPRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLVAYVEAELERNPLLERQAEPEGERP
AEGERTNDGDGDAHPGAGFEAAEAADAADMDGGHEERADWMQERLESSRAIEDRLDTNLE
NVFPDDSGREPAVPQPSGEAPAFSEWSGSGSGGRDDDGYNLEAFVSAETTLGDHLEGQLA
LAVSDPVERLIGHHLIDLIDEAGYLTADLAGIAERLGAPLASVERVLALVQAFDPPGIGA
RSLSECLAIQLRERNRYDPCMAALLAHLELLARREFATLKRVCGVDDEDLAEMVGEIRRL
NPKPGLAFGSGVIQPIVPDVFVRGSIDNWLVELNADTLPRVLVNQSYYSRVQKTTRNERE
KAFLSDCMQTATWLTRSLDQRARTILKVATEIVRQQDAFLTLGVQHLRPLNLRMVADAIG
MHESTVSRVTSNKYMATPRGIFEMKYFFSSSISSSDGGEAHSAESVRFRIKQMIDAESPD
DVLSDDTLVHRLREAGIDIARRTVAKYREAMRIPSSVQRRREKQAALSAG
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagcccgcgcctcgaattccgccagacccagtcgctggtgatgacgccgcag
ctgatgcaggcgatcaagctgctgcagctctccaatctcgatctggtcgcctatgtcgag
gccgagctggagcgcaacccgctgctggagcgccaggccgagcccgagggcgagcgcccc
gccgagggcgagcgcaccaatgacggcgacggcgacgcccatcccggcgccggcttcgag
gcggccgaggcggccgatgccgccgacatggacggcgggcacgaggagcgtgccgactgg
atgcaggagcggctggaatccagccgcgccatcgaggaccggctcgacaccaatctcgaa
aacgtgtttccggacgattccggccgcgagccggccgtgccccagccgagcggcgaggca
ccggccttctcggagtggtccggctccggctccggcggccgcgacgacgacggctacaat
ctggaagccttcgtctccgccgagaccacgctcggcgaccatctggagggccagcttgcc
cttgccgtctccgatccggtcgagcggctgatcggccatcacctcatcgacctgatcgac
gaggcggggtacctcacggccgacctcgccggcatcgccgagcgcctcggtgcgccgctg
gccagcgtcgagcgggtgctcgccctcgtgcaggctttcgacccgccgggcatcggcgcg
cgctcgctgtccgaatgcctcgccatccagctgcgcgagcgtaaccgctacgacccctgc
atggcggcgctgctcgcccatctcgaactgctcgcccggcgcgaattcgccacgctgaag
cgggtgtgcggcgtcgacgacgaggatctggcggaaatggtcggcgagatccgccggctc
aacccgaagccgggcctcgccttcggctccggcgtgatccagcccatcgtgccggatgtg
ttcgtgcgcgggtccatcgacaactggctggtggagctgaacgccgacacgctgccgcgc
gtgctggtcaaccagtcctattacagccgggtgcagaagacgacgcgcaacgagcgcgag
aaggcgttcctgtccgactgcatgcagaccgcgacctggctcacccgctcgctcgaccag
cgcgcccgcaccatcctcaaggtggcaaccgagatcgtgcgccagcaggacgccttcctc
acgctcggcgtgcagcatctgcggccgttgaacctgcgcatggtggcggacgccatcggc
atgcacgaatccaccgtctcgcgcgtcacgtccaacaaatacatggcgacgccgcgcgga
atcttcgagatgaagtatttcttctcgtcctccatttcctcgtccgacggcggcgaggcg
cattcggcggaatcggtgcgcttccgcatcaagcagatgatcgacgcggagagtccggac
gacgtgctttccgacgacacgctggtgcatcgcctgcgcgaggcgggaatcgacatcgcc
cgccgcacggtcgccaaataccgcgaggcgatgcgcattccttcatccgtgcagcgccgg
cgcgagaagcaggcggccctctcggccggctga
DBGET
integrated database retrieval system
