Anoxybacillus sp. PDR2: GRQ40_02260
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Entry
GRQ40_02260 CDS
T06397
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
and
Anoxybacillus sp. PDR2
Brite
KEGG Orthology (KO) [BR:
and00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
and03009
]
GRQ40_02260 (rlmD)
Enzymes [BR:
and01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GRQ40_02260 (rlmD)
Ribosome biogenesis [BR:
and03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GRQ40_02260 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
PrmA
MTS
Cons_hypoth95
Methyltransf_11
RrnaAD
N6_Mtase
N6_N4_Mtase
Methyltransf_12
TRM
Methyltransf_23
UPF0020
TPMT
PCMT
Ubie_methyltran
BORCS6
Motif
Other DBs
NCBI-ProteinID:
QHC02922
LinkDB
All DBs
Position
458039..459412
Genome browser
AA seq
457 aa
AA seq
DB search
MAKIEAPVKKNEYYDVVFEDLTHDGAGVAKVDGFPIFVANGLPEERAKIKVIKVKKGYGY
GRLVELYQPSPDRIDAPCAIYKQCGGCQLQHLSYEGQLKAKHKHVQEVMTRIGKITNVTI
HPVLGMKDPWRYRNKAQVPVGERDGGLVAGFYQQRTHDIIDMQACLIQQEMNDVVVQTVK
NICEAYGVEPYDEATHRGTLRHIMARYGAATKEVMVVLITRTKELPHKKKIVQAIAEQVP
NVKSIIQNINPKRTNVIMGDETNVLWGAEYIYDDIGGIQFAISARSFYQVNPEQTRVLYE
KALEYAQLTGEETVIDAYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAKRNAKLNGITNA
EFAVGEAETVIPHWYEQGVQADCVVVDPPRKGCDEALLQTIIAMKPKRVVYVSCNPATLA
RDLRILEDGGYRTLEIQPVDMFPHTNHVECVAKLTLK
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagatagaagcaccagtgaaaaaaaacgagtattatgacgttgtgtttgaagat
ttaacacatgatggcgcgggagttgcgaaagtcgacggcttcccgatttttgtggcgaac
gggctgccggaagaacgggcaaaaattaaagtcattaaagtgaaaaaaggctatggctat
ggccgtttagtcgagctatatcagccgagcccggaccgcatcgacgctccctgtgcgatt
tataaacaatgtggcggctgccagcttcagcatttaagctatgaagggcagttaaaagct
aagcataagcatgttcaagaagtgatgacgcgcatcggaaaaatcacgaatgtgaccatt
catcctgtactggggatgaaggacccatggcgctatcgcaacaaagctcaagttccggtt
ggcgagcgcgatggagggcttgtcgctggcttttatcagcagcgtacccacgacattatt
gatatgcaagcatgtctaatccagcaggaaatgaacgatgtggtggtgcagacggtcaaa
aacatctgtgaggcttatggagtcgagccgtatgatgaagctacgcatcgcgggacgctt
cgccatattatggcgcgttatggggcggcaacgaaggaggtcatggtggtcctcattacg
cgtacgaaggagctgccccataaaaagaaaatcgtacaagccattgcggaacaggtgccg
aacgtgaaatctatcatccaaaacatcaatccaaaacgcaccaatgtgattatgggggat
gaaacgaacgtattgtggggagcagaatatatttatgatgatattggcggcattcaattt
gccatttccgcccgctccttctatcaggtgaacccggaacaaacgagggtgttgtacgaa
aaggcgctcgagtacgcgcaattaacgggagaggaaacggtgatcgatgcttattgcggc
attggcaccatctcgcttttcttggccaaaaaggcgaaaaaagtgtatggagtcgaaatt
gtgccagaggcgattgaagacgcgaaacggaacgctaagctcaatggcatcaccaacgca
gagtttgctgtcggagaagcagaaacggtcattccgcactggtatgaacaaggcgtacaa
gccgactgcgtcgttgtcgatccgccgcgcaaaggatgcgatgaagcccttttacaaacg
atcatcgccatgaagccgaagcgagtcgtctacgtttcctgcaacccggcaacattagcg
cgcgatttgcgcattctcgaagatggcggctaccgaacactcgaaatccagcctgtcgac
atgttcccgcatacgaatcatgtggagtgtgtggcgaaattaaccttgaaataa
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