Actinomyces naeslundii: ATCC27039_06460
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Entry
ATCC27039_06460 CDS
T05566
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ane
Actinomyces naeslundii
Pathway
ane03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ane00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATCC27039_06460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ane03019
]
ATCC27039_06460
03009 Ribosome biogenesis [BR:
ane03009
]
ATCC27039_06460
Enzymes [BR:
ane01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ATCC27039_06460
Messenger RNA biogenesis [BR:
ane03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATCC27039_06460
Ribosome biogenesis [BR:
ane03009
]
Prokaryotic type
rRNA processing factors
ATCC27039_06460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
BDH76520
LinkDB
All DBs
Position
732347..735646
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AA seq
1099 aa
AA seq
DB search
MARRTTSESTESHEQDHTGADALSAPAPRRRRRVTAAAAAPAQAPAAEQPGSVGVLDGVA
AFGTDRDDEDGPEASAASDTGSDTAPTPPRRRRKVVAASAAPEAAPAAEPRTALAQAGES
DDAESERSEPASTTVLDADPVEGEGEPLVEDEGTEEEDPGVSEARDDGFAQVDTHEEGPE
APRLPAASLLFQAPDPSRARRRRRVTAATSAPQEAPTASRHQGGARDWADDEGGLGSGSR
TDAGDREAGDEGEDESSASTSARAGRGARRSRRRRAVADSGAPRPGRGDLADDESSDDAE
ASQDAATDSQAESSDDAQEGGTRRKRRRGGRGRRSRSRGDDRGDDSVRGDLEDGSQDAGE
DSSDATSSVRESSADGGAETGAGTASGSRRRRRRSRTRSDSGDPRDEVTALKGSTRLEAK
RQRRREGRAAGRRRPIVTEAEFLARRESVDRQMIVRESDGLNQIAVLEDGLLVEHYVSRH
TQTSMVGNVYVGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVNWDAAGLEGRPRRIEDALS
SGDTVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPGGSMTGISRKLPDTERSRLKKILK
RIVPDSAGVIVRTAAEGASQEQLTSDVERLVAQWEAIEKKASSVMKGSGKAPVLLKGEPE
LAVRVIRDVFNEDFRKLIVSGDRTWSTISQYIDEVSPDLAERLEHWTGPEEVFAAHRVDE
QLAKGFDRKVWLPSGGTLVIDRTEAMTVIDVNTGRFTGAGGTLEETVTRNNLEAAEEIVR
QLRLRDIGGMVVIDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRV
GQGLVEAFSTTCEHCKGRGFIVHDEPVENQQVDMSASASRGGGRSRGRKNREEQAAAGKK
ESKKDSQETKSSKSAKGSGRGKGSGGRDVVGSPESGADDEARAAVRGALAQIAAAAEQAH
KEAEQESPEPQEAVGPQGAGEEQAEMAHDVVEDGDIQDTQDTQASTGEDGPARSRARKSA
EKASERKAAKRTGKKTEKAEKKAEKKTGNGPEGPAEQQPGETPEESVGEKLARRTRRRAT
AKGAAPSSENSSETSDASA
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcgcaccacatcagaatcaacagaatcgcacgagcaggaccacaccggcgcc
gacgccctgagcgccccggctccgcgtcgtcgccgtcgagtcactgccgctgccgctgcc
ccggctcaggcgcccgctgccgagcagcccggctcggtcggcgtcttggacggtgtcgcc
gccttcggcaccgaccgggatgacgaggacggtccggaggcttcggccgcctcggacacc
ggttcggatacggccccgaccccgcctcgtcgtcgccgcaaggtggttgcggcctccgcc
gctcccgaggcggctccggccgctgagccccgcaccgcccttgctcaggccggtgagtcc
gatgatgcggagtcggagaggtctgagcctgcgtcgaccaccgtgctcgacgcagaccct
gtagagggtgagggcgagccgctggtcgaggatgaggggaccgaggaggaggaccccggc
gtgtccgaggctcgcgacgacgggttcgcgcaggtggacacgcatgaggaggggccggag
gctcctcgtcttccggctgcctcgctgctgttccaggcccccgaccccagtcgggcccgc
cggcgtcggcgggtcaccgccgcgacctccgctcctcaggaggcgccgaccgcctctcgt
caccagggcggtgcacgtgactgggcggatgatgagggtgggctcggctccggttcccga
accgatgccggtgaccgggaagcgggtgacgagggcgaggatgagtcctccgcgtcgacc
tctgcccgagccggccggggcgcgaggcggagccgccgtcgtcgggctgttgctgattcg
ggggcgccccgcccggggcgcggggacttggcggacgacgagtccagtgatgacgccgag
gcgtcccaggacgccgccaccgactcccaggccgagtcctccgatgatgctcaggagggc
ggcactcgccgcaagcgtcgccgtggtgggcgcggtcggcgctcgcgctcgcgtggcgat
gaccgtggtgatgactcggttcgcggtgacctcgaggacggttcccaggacgccggggag
gactcgagcgacgcgacgtcatcggtgcgggagtcctccgccgacggtggagcggagacg
ggtgcggggaccgcgtccggatcgcgccggcggcggcgtcggtcccgtacccgctcggac
agtggtgacccgcgtgatgaggtgaccgccctcaagggatccacccggttggaggccaag
cgtcagcgccgccgggaggggcgggcggccggacgtcgtcggcccatcgtcaccgaggcc
gagttcctggcccgccgcgagtccgtggaccgccagatgatcgtgcgcgagtccgatggc
ctcaaccagatcgccgtcctggaggatgggctcctcgtggagcactacgtctcccggcac
acccagacctccatggtcggcaacgtctacgtcggtcgggtccagaacgtcctgccctcc
atggaggccgccttcgtggaccttggcaaggggcgcaacgccgtgctctacgccggcgag
gtcaactgggacgccgcgggactggaggggcggccccgccggatcgaggacgcgctctcc
agcggggacactgttctggtccaggtcaccaaggaccccatcgggcacaagggcgcccgc
ctcaccagccagatcaccttggcgggccgctacctggtccttgttcccggcggctccatg
acggggatctcgcgtaagctgcccgacaccgagcgcagccgcctcaagaagatcctcaag
cggatcgtccccgactccgccggagtcatcgtgcgcaccgccgcggagggggccagtcag
gagcagctgacctccgacgtcgagcggctcgtcgctcagtgggaggccatcgagaagaag
gcgtcctccgtcatgaagggcagcggcaaggccccggtcctcctcaagggcgagcccgag
ctcgccgtgagggtcatccgtgacgtcttcaacgaggacttccgcaagctcatcgtctcc
ggggacaggacctggtcgacgatctcccagtacatcgacgaggtcagcccggacctggcc
gagaggctcgagcactggactggtcccgaggaggtcttcgccgcccatcgtgtggacgag
cagctcgccaagggcttcgaccgcaaggtctggctgcccagcggtggcaccctggtcatc
gaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggtcgcttcaccggggcgggc
ggcaccctggaggagaccgtcacccgtaacaacctcgaggccgccgaggagatcgtgcgc
cagctgcgcctgcgtgacatcggcggcatggtcgtcatcgacttcgtcgacatggtcctg
gagtccaaccgggatctcgtcctgcgccggctcgtggagtgcctgggccgtgaccgcacc
cgccaccaggtcaccgaggtcacctccctcggcctggttcagatgacccgcaagcgggtc
ggacaggggctggtcgaggccttctccaccacctgcgagcactgcaagggccgcggcttc
atcgttcacgacgagcccgtggagaaccagcaggtcgacatgtcggcctcggcctctcgc
ggcggcgggcgctcgcgagggcgcaagaaccgcgaggagcaggcggctgctggtaagaag
gagagcaagaaggactcccaggagaccaagagctccaagagcgctaagggctccggtcgc
ggcaagggatccgggggccgtgacgtcgtcggctcgcccgagtccggggctgatgacgag
gcccgggccgcggtccgcggcgccctggcccagatcgcggcagctgctgagcaggctcac
aaggaggctgagcaggagagcccggagcctcaggaggccgtcggtccgcagggggctggt
gaggagcaggccgagatggcgcatgacgtggtcgaggacggcgatatccaggatactcag
gacactcaggcctccaccggtgaggacgggccggccaggtccagggcgaggaagtcggcc
gagaaggcctcggagaggaaggccgccaagaggactggcaagaagaccgagaaggctgag
aagaaggctgagaagaagaccggcaacggacccgagggtcctgccgagcagcagcccggt
gagacgcctgaggagtcggtgggcgagaagctcgccaggagaaccaggagacgggccact
gccaagggcgctgcgccgtcgtcggagaattcttcagagacctccgacgcgtcggcctag
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