Actinomyces naeslundii: ATCC27039_10220
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Entry
ATCC27039_10220 CDS
T05566
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ane
Actinomyces naeslundii
Pathway
ane03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ane00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATCC27039_10220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ane03019
]
ATCC27039_10220
03009 Ribosome biogenesis [BR:
ane03009
]
ATCC27039_10220
Enzymes [BR:
ane01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATCC27039_10220
Messenger RNA biogenesis [BR:
ane03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATCC27039_10220
Ribosome biogenesis [BR:
ane03009
]
Prokaryotic type
rRNA helicases
ATCC27039_10220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDH76896
LinkDB
All DBs
Position
1175762..1178365
Genome browser
AA seq
867 aa
AA seq
DB search
MTTSSSTAPGSSDGAQSSESNGPLSLDALFSAELSGGRPADANRDDETVAAPHHSDDAAP
SPEDFATPASSDSPEDPEDVDHEDEADDVDRDRPEADPEDEAEDPDEDDGVDIDEDEVDG
HTPFIDSDADSNDHQQDDERPKSPRNRDKGGMKADHEDEEITFADLGLPGDLLKAVTDMG
FVTPTAIQKEAIPVLLAGRDVVGVAQTGTGKTAAFGLPLLDAVDSRDGVVQALVLAPTRE
LALQSAEAITDMASRSRGLDVVAVYGGAPYGPQIGALKGGAQVVVGTPGRVIDLIDKGAL
QLDDVRYFVLDEADEMLRMGFAEDVETIAESLPTERRTALFSATMPPAIQAVARQHLHEP
VQVEVSRPASTVATVHQTYAVVPFRHKIGAVSRVLAVTDAEAAIVFVRTKSTAEDVAIEL
AGRGIQAAAISGDVPQRERERLVERLRAGTLDVLVATDVAARGLDVDRIGLVVNFDVPRE
AEAYVHRIGRTGRAGRHGEAVTFLTPKEKGKLRQIERLTGSRLEEITLPSPADVSEHRAQ
KLLSKAATRHERGRLDMYLPLVSDSARDLDIDVEELAATLLALAVGDEGPRRREDRGGER
PQRARREENLDSEGTFLSASFEGGREKNRRGERGDRGEGRRSATRSGRREHEGPGTVYRI
EVGHRDRVLPGAIVGALANEGGIEGSDIGKIDILQSFSLVTIYADLSPEQLSVMGRATFA
GRELRIRPDEGPGHGWSGPNSGERRPKRRDWDDRGERGERRDRSERGFRPRRDDGDRGWK
DRDGRGGRGGYDRSDRGDRRDNRRWEERRGDRDGFRGREDRGGRGHGRDGYRGDRGSDRG
NGRGYGERNQNRFGGNRGGFRGGRGDR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgactacctcctccagcactgcgcccggctcctccgatggcgctcagagcagcgagagc
aacggccccctgagcctcgacgcgctcttctccgccgagctctccggcggccggcccgcc
gacgccaaccgtgacgatgaaaccgtcgccgcgccgcaccactctgatgacgccgctccc
tcacccgaggacttcgccactcccgcctcctccgactcccccgaggaccccgaggacgtc
gatcacgaggacgaggccgacgacgtcgaccgggaccggcccgaggccgacccggaggac
gaggccgaggaccccgacgaggatgacggcgtcgacatcgatgaggacgaggtcgacggc
cacacccccttcatcgactccgacgctgattccaacgaccaccagcaggacgacgagcgc
cccaagtccccgcgcaacagggacaagggcgggatgaaggcggatcacgaggacgaagag
atcaccttcgccgacctgggtcttcccggagacctgctcaaggccgtcaccgacatgggc
ttcgtgacgcccaccgccatccagaaggaggcgatcccggtcctgctggccggccgcgac
gtcgtcggcgtcgctcagaccggaaccgggaagaccgcggccttcgggctcccgctcctc
gacgccgtcgactcccgtgacggtgtggtccaggccctcgttctggccccgacccgcgag
ctcgccctccagagcgccgaggccatcaccgacatggcctcccgctcccgcgggctggac
gtggtggccgtctacggcggtgccccctacggtccccagatcggcgcgctcaagggcggt
gcccaggtcgtcgtcggcacccccggacgcgtcatcgacctcattgacaagggcgcgctc
cagctcgacgacgtgcgctacttcgtcctggacgaggccgacgagatgctgcgcatgggc
ttcgccgaggacgttgagacgattgcggagtcccttcccaccgagcggcgcaccgccctg
ttctcggccacgatgcctccggctatccaggccgtggcgcgccagcaccttcacgagccc
gttcaggtcgaggtctccaggccggcctccaccgtcgccaccgtccaccagacctatgcg
gtggttcccttccgccacaagatcggcgccgtctcgcgggtccttgccgtcaccgacgcc
gaggccgccatcgtcttcgtgcgcaccaagtccacggccgaggacgtcgccatcgagctg
gcgggccggggcatccaggccgccgcaatctccggagacgtgcctcagcgcgagcgcgag
cgtctggtggagcgtctgcgcgccggcaccctcgacgtactggtggccaccgacgtcgcc
gcccggggactggacgtggaccggatcggtctggtcgtcaacttcgatgtgccacgtgag
gccgaggcctatgtgcaccgcatcggccgtacggggcgcgccggtcgccacggcgaggcc
gtcaccttcctgacccccaaggagaagggcaaactccgtcagatcgaacgcctcaccggc
agccggctggaggagatcaccctgccctcccccgccgacgtctccgagcaccgtgcccag
aagctcctgtccaaggccgccacccgccacgagcgcggccgcctggacatgtacctgccg
ctggtcagtgactccgcccgggatctggacatcgacgtcgaggagctggcggccacgctg
ctggcgctcgccgtgggtgacgagggaccgcgcaggagagaggaccgtggcggtgagcgc
ccccagcgagcacgccgggaggagaacctcgactccgagggaaccttcctgtcggcctcc
ttcgagggtgggcgcgagaagaaccgtcgcggtgagcggggagaccgtggcgagggacgc
cgctcggccacgcgttccggacgccgcgagcacgagggccccgggaccgtctaccgcatc
gaggtgggccaccgagaccgggtccttccgggcgcgatcgtcggtgccctggccaacgag
ggcggtatcgagggctccgacatcggcaagatcgacatccttcagtccttctccctggtc
acgatctacgccgacctcagccccgagcagctgagcgtcatgggacgggccaccttcgcc
ggccgcgagctgcggatccgccccgacgagggaccgggccacggctggtccggccccaac
agtggggagcgtcgtcccaagcggcgcgactgggacgaccggggtgagcgcggggagcgc
agagaccgttccgagcgcggcttccggccgcgccgtgatgacggtgaccgtggctggaag
gaccgtgacgggcgcggcggcaggggcggttacgaccgctcagaccgcggggaccggcgc
gacaaccgccggtgggaggagcgccggggtgaccgggacggcttccggggccgcgaggac
cggggcggccgtggccacggccgcgacggctaccggggtgaccgcggcagtgaccgtgga
aacggccgtggctatggtgagcgcaaccagaaccgcttcggcggcaaccggggcggattc
cgtggaggacgcggcgaccgctga
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