Actinomyces naeslundii: ATCC27039_15870
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Entry
ATCC27039_15870 CDS
T05566
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ane
Actinomyces naeslundii
Pathway
ane03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ane00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATCC27039_15870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ane03021
]
ATCC27039_15870 (rpoC)
03400 DNA repair and recombination proteins [BR:
ane03400
]
ATCC27039_15870 (rpoC)
Enzymes [BR:
ane01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATCC27039_15870 (rpoC)
Transcription machinery [BR:
ane03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATCC27039_15870 (rpoC)
DNA repair and recombination proteins [BR:
ane03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATCC27039_15870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDH77461
LinkDB
All DBs
Position
complement(1878450..1882403)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDANVFDRIQLGLATAEDIRSWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
ACGKYKRVRYKGIVCERCGVEVTRSKVRRERMAHIKLAAPVTHIWYFKGVPSRLGYLLNL
APKDLEKVIYFAAYMVTEVDEEGRHDDLPSLRNELEVKKKHLEESGQAEVEARQQRLEED
LAQLEAEGAEASQRDKLRKTAEREITAMRRRNQRALEHMDKVWDRFVSLKVGDLEGDEVL
YRDMVADYGIYFKGSMGAEAIQARLRSFDLEGEASSLAEIVENGTGQRKTRAIKRLKVVN
AFRMTGTAPESMVLDNIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLMDL
GAPTIIVNNEKRMLQDAVDALFDNGRRGRPVTGVGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPSQMALELFKPFVMKRLVELKEAQNVKAAKRMVERAN
PKVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLGAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGTYYLTSDPDPAVEVER
DAEGNEIVPAFSSFAEAVMAYDFGKLHVNAACDIRFEEGIAAPEGWQPPEGWSEGDPITL
RTSLGRALFNTSLPETFPYVNYVVDKKQLGNIVNALAENYSRVEVAASLDALKANGFYWS
TWSGITVAFADVVSPEAKQEILVRYENEAAEIEEQFELGALTEDDRYASLIDIWTKATAE
VAEAMRENFPQRNTVYQMVVSGARGNWDQIRQLAGMRGLVADPKQRLIERPIKSNYREGL
SVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTRKGLTKRIFSW
IEAGDELIKEPSEILGTTVFGTTLARDAIDAEGNLIIEAGADLGDAEIQAAIDAGIEEIT
VRSVLTCDSNVGTCAACYGRSLATGKRVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAA
GAADITQGLPRVQELFEARTPKGEAAVAEAAGTLKIEDDADGKRLVITRDDGEEDVIVPV
SRRQRLLVADGDHVEPGQALTEGPVDPKKVLRLRSVAATQRHLVEEVQEVYRSQGVDIHS
KHIEVIVRQMLRRVTVLDSGDTHLLQGDLVDVMHYRAENRRVMAEGGKTATGRTELMGIT
KASLATDSWLSAASFQETTRVLTEAAMNGKSDPLLGLKENVILGKLIPAGTGLARYSDIE
VEPTEEVKAEVFSRVDLGDNVFGESVALDDFHFGGDLRADFSDDFRTGFSSSEDVEF
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgccaacgtgttcgacaggatccagctcggcctcgccactgcggaggacatt
cgctcgtggtcccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
gcctgcggtaagtacaagcgcgtgcgctacaagggcatcgtctgcgagcgctgcggggtc
gaggtcactcgctccaaggtgcgtcgcgagcgcatggcccacatcaagctcgccgctccg
gtcacccacatctggtacttcaagggtgttccctcacgcctgggctacctgctcaacctc
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccgaggtcgac
gaggagggccgtcacgacgacctgccctcgctgcgcaacgagctcgaggtcaagaagaag
cacctcgaggagtccggccaggccgaggtcgaggcccgccagcagcgccttgaggaggac
ctcgcccagctcgaggccgagggcgccgaggcctcccagcgcgacaagctccgcaagacc
gccgagcgcgagatcacggccatgcgccgtcgcaaccagcgagccctggagcacatggac
aaggtgtgggaccgcttcgtgagcctcaaggtcggtgacctggagggtgacgaggtcctc
taccgcgacatggtcgccgactacggcatctacttcaagggctccatgggcgccgaggcc
atccaagcccgcctgcgcagcttcgacctggagggcgaggcctcctccctggccgagatc
gtcgagaacggcaccggtcagcgcaagacccgcgccatcaagcgtctcaaggtcgtcaac
gccttccgcatgaccggcaccgccccggagtcgatggtcctggacaacatcccggtcatc
ccgccggacctgcgccccatggtccagctcgacggtggccgcttcgccaccagcgacctc
aacgacctctaccgccgcgtcatcaaccgcaacaaccgcctcaagcggctcatggacctg
ggcgccccgacgatcatcgtcaacaacgagaagcgcatgcttcaggacgccgtcgacgct
ctgttcgacaacggccgtcgaggccgcccggtcaccggcgtgggcaaccgcccgctgaag
tccctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctcctgggcaag
cgcgtggactactccggccgtagcgtcatcgtcgtcggcccccagctcaagctgcaccag
tgcggtctgcccagccagatggccctggagctgttcaagcccttcgtcatgaagcggctc
gtcgagctcaaggaggcccagaacgtcaaggccgccaagcgcatggtcgagcgcgccaac
cccaaggtctgggacgtcctggccgaggtcatccgcgagcaccccgtgctgctcaaccgc
gcccccaccctgcaccgcctgggcattcaggcattcgagccccagctcatcgagggcaag
gccatccagctgcacccgctcgtgtgcggcgccttcaacgccgacttcgacggcgaccag
atggccgtccacctgccgctgggtgctgaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctcaagccctctgacgggcgccctgtgaccatgcccagtcaggac
atgatcatcggtacctactacctcacctccgaccccgacccggcggtcgaggtcgagcgc
gacgccgagggcaacgagatcgtcccggccttctcctccttcgcggaggcggtcatggcc
tacgacttcggcaagctccacgtcaacgccgcctgcgacatccgcttcgaggagggcatc
gccgcgcccgagggctggcagccgcccgaggggtggagcgagggcgacccgatcaccctg
cgtacctcgctgggccgggccctgttcaacacctcgctgcccgagaccttcccctacgtc
aactacgtcgtggacaagaagcagctgggcaacatcgtcaacgccctggcggagaactac
tcccgcgtggaggtggccgcctccctggacgccctcaaggccaacggcttctactggtcc
acctggtccggtatcaccgtcgccttcgccgacgtcgtctccccggaggccaagcaggag
atcctcgttcgctacgagaacgaggccgccgagatcgaggagcagttcgagctcggtgcc
ctcaccgaggacgaccgctacgcctcgctcatcgacatctggaccaaggccaccgccgag
gtcgccgaggcgatgcgcgagaacttcccgcagcgcaacaccgtctaccagatggtggtc
tccggggctcgaggcaactgggaccagatccgccagctcgccggtatgcgcggtctggtg
gccgaccccaagcagcgcctcatcgagcgtcccatcaagtcgaactaccgcgagggtctg
agcgtcctggagtacttcatcgccacccacggcgcccgtaagggcctggcggacacggcg
ctgcgtaccgccgactccggctacctcacgcgtcgtctggtcgacgtctcccaggacgtc
atcgtccgcgaggaggactgcggcacccgcaagggcctgaccaagcggatcttctcctgg
atcgaggccggcgacgagctcatcaaggagccctcggagatcctgggcaccaccgtgttc
ggcaccaccctggcgcgcgacgccatcgacgccgagggcaacctcatcatcgaggccggc
gccgacctcggcgacgccgagatccaggccgccatcgacgcgggcatcgaggagatcacg
gtccgctccgtgctcacctgcgactccaacgtcggtacctgcgccgcctgctacggccgc
tcgctggccaccggtaagcgcgtggacatcggtgaggccgtcggcatcatcgccgcccag
tccatcggtgagcccggaacgcagctgaccatgcgtaccttccacaccggtggcgcggcc
ggcgccgccgacatcacccagggtctgccccgtgtgcaggagctcttcgaggcccgcacg
cccaagggcgaggccgccgtggccgaggccgccggcaccctcaagatcgaggacgacgcc
gacggcaagcgtctggtcatcacccgtgacgacggcgaggaggacgtcatcgtcccggtc
tcgcgtcgtcagcgcctgctggtggccgacggcgaccacgtggagcccggccaggccctc
accgaggggccggtcgaccccaagaaggtcctgcgcctgcgttcggtggccgccactcag
cgccacctggtggaggaggtccaggaggtctaccgctcccagggcgtggacatccactcc
aagcacatcgaggtcatcgtgcgccagatgctgcgccgcgtgaccgtgctggactccggg
gacacccacctcctccagggtgacctggtcgatgtcatgcactaccgcgccgagaaccgc
cgggtcatggccgagggcggtaagaccgccaccggccgtaccgagctcatgggaatcacc
aaggcctcgctggccacggactcctggctgagcgccgcctccttccaggagaccacgcgc
gtgctcaccgaggccgccatgaacggcaagtccgacccgctgctcgggctcaaggagaac
gtcatcctcggtaagctcatccccgccggtaccggactggcccggtactcggacatcgag
gtcgagcccaccgaggaggtcaaggccgaggtcttctcccgcgtggacctgggggacaac
gtcttcggcgagtccgtcgccctggacgacttccacttcggcggtgacctgcgtgcggac
ttctccgacgacttccgcaccggcttctccagcagcgaggacgtcgagttctga
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