Actinomyces naeslundii: ATCC27039_15880
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Entry
ATCC27039_15880 CDS
T05566
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ane
Actinomyces naeslundii
Pathway
ane03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ane00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATCC27039_15880 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ane03021
]
ATCC27039_15880 (rpoB)
03400 DNA repair and recombination proteins [BR:
ane03400
]
ATCC27039_15880 (rpoB)
Enzymes [BR:
ane01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATCC27039_15880 (rpoB)
Transcription machinery [BR:
ane03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATCC27039_15880 (rpoB)
DNA repair and recombination proteins [BR:
ane03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATCC27039_15880 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BDH77462
LinkDB
All DBs
Position
complement(1882581..1886102)
Genome browser
AA seq
1173 aa
AA seq
DB search
MAASRTSAPTAADIAARTASRRINFAKIAEPMQAPNLLALQTESFDWLVGNERWRERMIA
ANKAHPGSLPETSGLEEIFDEISPIEDFGETMALSFHDHRFEEPKYTAEECQEKDLTYSA
PLYVVADFENFSTGEIKSQTVFMGDFPLMTDKGTFIVNGSERVVVSQLVRSPGVYFERTT
EKATDKYVYNVKFIPSRGAWLEFEIDKSDRVAVRIDRKRKQDITVFLLALGMDESEIRKE
FADFPALTSALDEDRKITTQDEALLDIYKKIRPGEPPSVEAGRTLLENFYFNPKRYDLAK
VGRYKINKKLGLASDLTESTLRIEDIVAALRYLLALHAGAETVEGVRDGEITEIAVEYDD
IDHLGNRRIRAVGELIQAQVRTGMSRMERQVRERMTTQDVEAITPNTLINIRPVTAAIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERASMEVRDVHTSHYGRMCPIESP
EGPNIGLIGSLATFGRINPFGFVETPYRVVVDGQVTDETHYLTADDEDRHVIAQANVTLT
EDGHFAEDHVLCRVTGGEPALVPSSQVDLMDVSPRQMVSVGTSLIPFLEHDDANRALMGA
NMQRQAVPLIRPDAPLVGTGMERRTAVDAGDVLVADKAGVVTEVCADFVRVANDDGTERV
YKVAKFRRSNQGNCYNQRVVATEGERVEVGSVLADGPATNEGDLALGQNLLVAFMTWEGL
NYEDAIIVSQRVVAEDMLTSIHIEEHEVDARDTKLGAEEITRDIPNVSEETLANLDERGI
IRIGAEVRSGDILVGKVTPKGETELTSEERLLRAIFGEKAREVRDTSLRVPHGEYGIVTG
VREIDAASDDAELPAGVNRMVRVYIAQRRKITVGDKLSGRHGNKGVISKILPVEDMPFLA
DGTPVDVILNPLGVPSRMNVGQVLELHLGWVASRGWDATAAREAGEAWTANLPENGIKAE
PRTPVATPVFDGVRDNELMGLLNSTLPTSDGLQLVEPNGKARLFDGRSGEPFPYPISVGY
MYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAHALQE
LLTVKSDDVNGRVKVYEAIVKGEDIPEPGIPESFKVLMKEMQSLCLNVEALDAEGSAIAL
DDTDDDGSRAAEELGFDLGRRPGGATASTVDEI
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcacctctgcacccactgctgctgacatcgccgctcgtaccgcgtcg
cgtcgtatcaactttgccaagatcgctgagcccatgcaggctccgaatctgctcgccctc
cagaccgagagcttcgactggctcgtcggtaacgagagatggcgtgagcggatgatcgcc
gccaacaaggcgcacccgggttccctgcccgagacctccggtctggaggagatcttcgat
gagatctccccgatcgaggacttcggggagaccatggccctgtccttccacgaccaccgc
ttcgaggagccgaagtacacggctgaggagtgccaggagaaggacctcacctactccgcc
cctctttacgtggtggcggacttcgagaacttctccaccggtgagatcaagtcccagacg
gtcttcatgggcgacttcccgctcatgacggacaagggcaccttcatcgtcaacggctcc
gagcgcgtcgtcgtctcccagctcgtgcgctcacctggcgtgtacttcgagcgcaccacc
gagaaggccacggataagtacgtctacaacgtcaagttcatcccctcgcgcggcgcctgg
ctcgagttcgagatcgacaagtcggaccgtgtcgcggtgcgcatcgaccgcaagcgcaag
caggacatcaccgtcttcctgctggccctgggcatggacgagtcggagatccgcaaggag
ttcgccgacttcccggccctgacctccgcgctggacgaggaccgcaagatcaccacccag
gacgaggcgctcctggacatctacaagaagatccgccccggcgagccgcccagcgtcgag
gccggccgcaccctgctggagaacttctacttcaaccccaagcgctacgacctggccaag
gtcggtcgctacaagatcaacaagaagctgggcctggcctcggacctgaccgagtccacc
ctgcggatcgaggacatcgtcgcggccctgcgctacctgctggccctgcacgccggcgcc
gagaccgtcgagggcgtgcgcgacggcgagatcaccgagatcgccgtcgagtacgacgac
atcgaccacctgggcaaccgtcgcatccgcgccgtcggcgagctcatccaggcgcaggtg
cgcactggtatgagccgcatggagcgtcaggtgcgcgagcgcatgaccacccaggacgtc
gaggccatcacgccgaacacgctcatcaacatccggcccgtgacggccgcgatcaaggag
ttcttcggcacctcccagctgagccagttcatggatcagaacaacccgctggcgggcctg
acccacaagcgccgtctgagcgccctgggccccggcggcctgtcccgtgagcgcgcctcc
atggaggtccgcgacgtccacacctcgcactacgggcgcatgtgccccatcgagtccccc
gagggtcccaacatcggcctcatcggctcgctggccaccttcgggcgcatcaaccccttc
ggcttcgtcgagaccccctaccgcgtcgtcgtcgacggccaggtcaccgacgagacccac
tacctgacggccgacgacgaggaccgccacgtcatcgcccaggccaacgtcaccctcacc
gaggacggccacttcgccgaggaccacgtcctgtgccgcgtcaccggcggtgagccggcc
ctcgtgccctcctcgcaggtggacctcatggacgtctccccgcgccagatggtgtcggtg
ggtacctccctcatccccttcctcgagcacgacgacgccaaccgcgccctcatgggcgcc
aacatgcagcgccaggccgtgccgctcatccgtcccgacgccccgctggtgggcacgggc
atggagcggcgcaccgccgtcgacgccggcgacgtcctcgtggccgacaaggccggagtc
gtcaccgaggtctgcgctgacttcgtgcgcgtggcgaatgacgacggcaccgagagggtc
tacaaggtcgccaagttccgccgctccaaccagggcaactgctacaaccagcgggtcgtg
gccaccgagggcgagcgcgtcgaggtcggttcggtcctggccgacggccccgccaccaac
gagggcgacctggccctgggccagaacctcctggtcgccttcatgacctgggagggcctc
aactacgaggacgccatcatcgtctcccagcgtgtggtcgccgaggacatgctcacctcg
atccacatcgaggagcacgaggtcgacgcccgcgacaccaagctgggtgccgaggagatc
acccgggacatccccaacgtcagcgaggagaccctggccaacctcgacgagcgcggcatc
atccgcatcggtgccgaggtccgcagcggtgacatcctcgtgggcaaggtgacccccaag
ggtgagaccgagctgaccagcgaggagcgtctcctgcgcgccatcttcggtgagaaggcc
cgcgaggtccgcgacacctccctgcgcgtgccccacggtgagtacggcatcgtcaccggc
gtgcgcgagatcgacgccgcctccgacgacgccgagctgcccgcgggcgtcaaccgcatg
gtgcgcgtctacatcgcccagcgacgcaagatcaccgtgggtgacaagctctccggacgt
cacggcaacaagggcgtcatctccaagatcctgcccgtggaggacatgcccttcctggcc
gacggcaccccggtcgacgtcatcctcaacccgctgggcgtgcccagccgtatgaacgtc
ggccaggtcctcgagctgcacctggggtgggtcgcctcccgcggctgggacgccaccgcc
gcccgtgaggccggcgaggcctggaccgccaacctgcccgagaacggcatcaaggccgag
ccccgcacccccgtggccacacccgtcttcgacggcgtgcgcgacaacgagctgatgggg
ctgctgaactcgacgctgccgacctccgacggcctgcagctggtggagcccaacggcaag
gcgcgcctgttcgacggccgctccggcgagcccttcccgtaccccatctcggtgggctac
atgtacatcctcaagctccaccacctcgtggacgacaagatccacgcccgctccacgggc
ccgtactccatgatcacccagcagccgctgggtggtaaggcccagttcggtggtcagcgc
ttcggtgagatggaggtgtgggccatggaggcgtacggcgccgcccacgccctccaggag
ctcctcaccgtcaagtccgatgacgtcaacggtcgcgtcaaggtctacgaggccatcgtc
aagggcgaggacatccccgagcccggcatccccgagtccttcaaggtgctcatgaaggag
atgcagtcactgtgcctgaacgtcgaggccctggacgccgagggcagcgccatcgccctg
gacgacaccgacgacgacggctcacgcgccgccgaggagctcggcttcgacctgggtcgg
cgtccgggtggagccaccgcctccacggtcgacgagatctga
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