Aneurinibacillus sp. Ricciae_BoGa-3: PP175_00805
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Entry
PP175_00805 CDS
T10201
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aneu Aneurinibacillus sp. Ricciae_BoGa-3
Pathway
aneu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aneu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PP175_00805 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aneu03400
]
PP175_00805 (mfd)
Enzymes [BR:
aneu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PP175_00805 (mfd)
DNA repair and recombination proteins [BR:
aneu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PP175_00805 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WCK54632
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All DBs
Position
151339..154896
Genome browser
AA seq
1185 aa
AA seq
DB search
MQGLLERFFADDEFQAIVSGYREGLREQLASGLSGSARQLFLAAVYQKIDRSIVIVTHNM
YQAQKIYDDMNQLIPSDRLWLYPANELVLSEVSVASPETLSQRIEVMNELAKGRRGVLII
PYAGIRRPVVPVEQWKEAQIKLAVEEEIDLELFLEKMVALGYERVEMVEARGELSVRGGI
IDIFPVYMNHPVRIELFDVEISSIRTFDISNQRSVEKMSEIIIGPAREFFGGREIFIKAS
ERLEQVMGESLKKIRDAQVKEQIVEKVGAEIEKLKSGTSFPGLYKYSSLLYPEQHSLLDY
MGTAPLLVVDEPSRIMEAAAQIDKDENEWKIALIEEGEFVPDVQISYPLDSIIAPKKRPI
LHISLFLRQVHKTNPQNIVNFNCKTMQNFHGQMNVLKAELERWKKYRYTVMFCAADEERA
RRLERVFQDYQIEADIVLNNEEAIKSGRPVITLGNLQTGFELPIQHLVVVTESEVFTKKQ
RKASKLRTNLSNAERIKSYTELAVGDFVVHVNHGIGKYLGIETLDINGIHKDYLHIKYAG
NDKLYVPIEQIDQVQKYVGSEEKEPKIYKLGGSDWKKVKSRVRASVQDIAQDLIKLYAAR
QEAKGYAFNRDSDEMREFEAMFPYEETEDQLRAISEIKADMEIPRPMDRLLCGDVGYGKT
EVAIRAAFKAAMDGKQVAVLVPTTILAQQHYETFRERFSDYPVNIAVISRFRSKKEQTQT
IKGIKAGTVDIVIGTHRLLSKDVVFRDLGLLIVDEEQRFGVTHKEKLKRLKTNVDVLTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYSGALVREAIEREMARGGQVYFL
YNQVQGIEKMADQIRMLVPEAKVVIAHGQMSETELESVMLSFLEGESDVLVSTTIIETGV
DIPNVNTLIVTNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFIASVGFDLYSEMLREAIEELKGEPKKQEE
IQPEISLTIDAFIPSDYVQDGKQKIEMYKKFAAVSTQAEIQELREEMQDRFGPLPESVEN
LLYVARLRAYAIRNRIVEISQKDQDIKILFHEDRTSAVDWSRIFDLTSKFQRRISVSKTG
QQVAITVKVKGLKPEEAILLMEDFLQEFEQLNKDKEREEPSNVAK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgcagggattactagagagatttttcgcggacgatgaatttcaggcgattgtaagcggc
taccgcgaaggcttgcgcgagcaactcgcgtctggattaagcggttcggcccgccagctt
tttctcgctgcggtttatcaaaaaattgaccgttctattgtaatcgttacccataacatg
tatcaagcgcagaagatttacgatgatatgaatcagcttatcccgtccgacaggctgtgg
ctatatccggctaacgaactggtgctttccgaagtatcggttgcaagccctgaaacacta
agccagcgaattgaggtaatgaacgagctagccaagggcaggcgtggtgtactcattatt
ccatatgccggaattcggcgtccggttgtacctgtcgagcagtggaaagaagcgcaaatt
aagctggccgttgaagaggaaattgatctggagctttttctggagaagatggttgcgctt
ggatacgaacgggtagagatggtggaagcgcggggggagttgagcgtccgcggcggaatt
attgatatttttcctgtttatatgaatcacccggtacgaattgaattgtttgatgtggag
atttcctctatcagaacgttcgatattagcaaccagcgttcagttgagaagatgagtgaa
attataataggaccggcccgcgagtttttcgggggaagggaaatatttataaaagcttcc
gaacggctcgaacaggtaatgggcgaatccctcaaaaaaatccgggatgcccaggttaag
gaacaaattgttgaaaaggttggcgcagagatagaaaagctaaagtctggaacaagcttc
cctggcctttataaatacagctctttgctctatcctgagcagcatagtttgctagattat
atggggacagcaccgcttttggttgtggatgagccttctcgcattatggaggcggctgcc
caaatcgataaggatgagaatgagtggaaaatagcccttattgaggagggtgagtttgtg
ccggatgttcaaatttcttatccgctcgactccatcattgcaccgaaaaagcggccgatt
ttgcacatctccttattcctgcgccaagtacacaaaacaaatccgcaaaatatcgtaaac
ttcaactgtaaaacgatgcagaatttccatggccagatgaacgtgctgaaagccgaactg
gaacgatggaagaagtatcgttacacggttatgttctgcgctgcggatgaagagcgggcg
cgcaggctggagcgagtttttcaagattatcagatcgaggccgatattgttttaaataat
gaagaagccattaagagcggcaggcctgtcataacactcgggaacctgcagaccggtttt
gagctgccgattcagcatctcgtcgtcgtaacagagagcgaagttttcaccaaaaaacaa
cggaaagcatctaaactgcgcaccaatttaagcaatgcagaacggattaaaagttatacg
gagcttgcggttggggatttcgttgttcatgtgaaccacggaataggaaaatatcttggg
attgaaacccttgatattaatggtattcataaagactatcttcatattaaatatgcaggc
aacgacaagctgtatgtgccaattgagcagatcgatcaggtgcagaaatatgtcggcagt
gaggaaaaggaaccaaaaatttacaagctgggcggaagcgattggaagaaggtaaaaagc
cgcgtccgggcatccgtacaggacatcgcacaggatttaattaagctgtatgccgcgcgc
caggaggcgaagggctatgcctttaaccgggactctgatgaaatgcgggaatttgaagcg
atgtttccttatgaagaaacagaggatcagctgcgggccattagcgaaatcaaagcagac
atggaaattccgcgtcctatggatcgcctgctctgcggagatgtgggctacggcaagaca
gaagttgccatccgcgctgcctttaaagccgccatggacgggaagcaggttgccgtgctt
gtgcccaccacgattttggcacagcagcactatgaaacatttagagaacgtttttccgat
tatccggtaaatattgcagtaatcagccgctttcgctcgaagaaggagcagacccagacg
ataaaaggaatcaaagcaggaaccgtggatattgtcattggtacccaccgcctgctttcc
aaggatgtggtttttcgggatcttgggttgttaattgtcgatgaggaacagcgttttggc
gtaacacataaggaaaagttaaagaggctcaaaacaaatgtggatgttctcaccttaaca
gccacaccaattccaaggactctgcatatgtctatgctgggggtgcgtgacctgtctgtt
attgagaccccgccggaaaaccggttcccggtgcaaacgtatgtgatggagtacagcggt
gcacttgtgcgggaggccatcgagcgcgaaatggcccgtggggggcaggtttattttcta
tacaatcaggtgcaaggcattgaaaaaatggccgaccaaatccgcatgcttgttccggaa
gcgaaggtagttatcgcacatgggcagatgagcgaaacggaactggaatccgttatgctc
agctttcttgaaggggagtccgacgtgctggtgagtaccaccatcattgaaacgggtgtg
gatatcccgaatgtaaatacgcttatcgttacaaatgccgaccggatgggtctttctcag
ttgtatcagctgcgcggccgtgtcggacgatccaatagaattgcttatgcttatttcacg
taccagcgtgacaaggtacttacggaggttgcggagaaaaggctccagtctatcaaagag
tttactgaactgggatcagggtttaaaatcgccatgcgggacttatccatccgcggagcc
ggcaatttgcttggtgctgagcagcacggtttcattgcctctgtcggctttgacttatac
agtgaaatgttgagagaagccatcgaagaattaaaaggcgaaccaaagaagcaagaagag
atacagcctgagatctctcttacaatcgatgcattcattccttctgactatgtccaggat
ggcaagcagaaaattgaaatgtataagaaatttgccgctgtaagtacgcaggcggagatc
caggagctgcgagaagaaatgcaggatcgtttcggaccgctcccggaaagcgtggaaaat
ctactgtatgttgcccgtctccgtgcgtatgcgattcgcaatagaattgtggagatttcg
cagaaagaccaggacattaaaatactgttccacgaagaccggacgtctgcggtggactgg
agccggattttcgatttgacatcgaagttccagcgcagaatcagtgtttccaaaactgga
cagcaggtagccataactgttaaagttaagggattgaaacctgaagaagctatccttctt
atggaagattttcttcaggagtttgaacagttgaataaggacaaggaaagagaggaacca
tccaatgttgcgaaataa
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