Aneurinibacillus sp. Ricciae_BoGa-3: PP175_09520
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Entry
PP175_09520 CDS
T10201
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aneu Aneurinibacillus sp. Ricciae_BoGa-3
Pathway
aneu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aneu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PP175_09520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aneu03400
]
PP175_09520 (ligD)
Enzymes [BR:
aneu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PP175_09520 (ligD)
DNA repair and recombination proteins [BR:
aneu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PP175_09520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DUF5064
Motif
Other DBs
NCBI-ProteinID:
WCK56120
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All DBs
Position
1844918..1845784
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AA seq
288 aa
AA seq
DB search
MSKKMSITNPDKIMWPSTSTTKADYIAYLHIVADYVTAYTKDRLLTLIRYPGGVDGKSFY
QKHAPAHTPEWVEVVSRGQDRFIVCNNRETLYWLGNQAALELHIAFNTYSREEEPTELVF
DLDPSIEGFSHVREAALLMRDVLVGVGLVPYVKTSGATGLQIYVPIQLGYTYSDTRRVSR
FIAEFLVQKHPRLLTVERLKRNRGDRLYIDYVQHAPGKTLPAPYSTRARQTPTVSTPVAW
EEIEKGCTPEDFTIYTVPERLEKQGDLFAPLQSITSRQSLDAILQFLD
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagaagatgtccatcaccaatcccgataaaatcatgtggccgtctacctcgaca
acgaaagccgattacatagcgtatttgcacatcgtagccgactacgtcacagcttatacg
aaagaccgtctgctgaccctcatccgttaccctggaggggtcgatggaaagtccttttac
cagaagcacgcaccggcgcacacgcctgagtgggttgaggtggttagccggggacaagac
cgttttattgtttgcaacaatagggagacactatattggctgggcaatcaagccgctctt
gaacttcacatcgcatttaacacatacagcagggaagaggagccaacagagcttgtcttt
gatttggatccgtctatcgagggtttctctcacgttagagaagcagccctccttatgcgg
gatgtgttagttggggttgggctggttccgtatgtcaaaacatcaggtgctaccggtttg
caaatttatgttcccattcaactgggatatacgtatagcgacacgcgcagggttagccgg
tttatcgctgaatttcttgtgcagaagcaccctcggcttttaacagtggaacgcctgaag
cggaacaggggagacaggctttatattgattatgttcagcatgcacctggaaaaacgctg
ccggctccttattcaacgcgtgcccggcaaacacctacagtctcaacgcctgttgcctgg
gaagaaatcgaaaaagggtgcaccccggaggattttacgatttataccgtaccggaacgg
ctggagaagcagggggatttgtttgcacccctgcaaagtataacgagtaggcagtcactg
gatgctatcctgcaatttctcgattga
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