Aquipluma nitroreducens: AQPE_1900
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Entry
AQPE_1900 CDS
T09507
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
anf
Aquipluma nitroreducens
Pathway
anf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQPE_1900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anf03019
]
AQPE_1900
03016 Transfer RNA biogenesis [BR:
anf03016
]
AQPE_1900
Enzymes [BR:
anf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AQPE_1900
Messenger RNA biogenesis [BR:
anf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AQPE_1900
Transfer RNA biogenesis [BR:
anf03016
]
Prokaryotic type
tRNA degradation factors
AQPE_1900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
OB_HELZ2
RNase_II_C_S1
Rrp44_CSD1
EpmC
Cullin_AB
Motif
Other DBs
NCBI-ProteinID:
BBE17743
UniProt:
A0A5K7S864
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All DBs
Position
2143073..2145334
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AA seq
753 aa
AA seq
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MFRKMFATLHVNFNTPKMAKNKKHKIEKLVETFNKPKLKNAILTLFLDNPERTYNYKQIA
ELLKIKDQEITKLVFVVLEELTETKNLYSVQRGKYKLQSRSGAVLGKVEIQPQGYAYIVS
EEFDKPILVSNRNLNHAMEGDKVKVQLFAIRKKQQVEGEVVEIVERAKSTFVGTISKSNN
YAFFIPSGKTGFDLFIPNEKLNGAKDGQKAIAKITEWPARAKNPFGEIIEVLGNVGDNNT
EMHAILAEYDLPLRFPDNVLKAAEKIPDEIPEEEIRRRRDMRGVTTFTIDPKDAKDFDDA
LSIQKLENGFWEIGVHIADVSYYVTPGTILDEEAYSRATSVYLVDRVVPMLPEKLSNGVC
SLRPNEDKLCFSAIFQLNDDSEIQHQWFGRTVIHSDKRFAYEDAQAIIESGEGELKDEVL
TMNRLAIKLREARFKHGSIAFERVEVKFEIDENGKPLSVYFKEAKESNQLVEEFMLLANK
RVAEFIGKTDDKRAAKTFVYRIHDKPDPEKLMNFNHFIHKFGYILQLGTPGQISKSMNLL
MTNVKGKNEQNVIETLAIRTMAKAVYSTRNIGHYGLSFEYYTHFTSPIRRYPDVMVHRLL
ERYLAGGKTANSQKYEDMCKHSSDMENKAANAERSSIKYKQVEFMQDKIGQEFSGVISGV
TDWGIYVELENKCEGMVSVSTLDDDFYIFDEKNYCLIGRHAHRKFQLGDVVQVEIARANL
EKKQLDFRLAKEKNSEGTKQFFHPENKKKGRRL
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgaaaaatgtttgctaccttacatgtgaattttaatacccccaaaatggcaaag
aataaaaaacataaaatagaaaaactggttgaaacatttaacaagccaaaacttaaaaat
gctatccttactttatttctggataaccccgaacggacctataactacaaacaaatagct
gaacttcttaaaattaaagatcaggaaattaccaaactggttttcgtggtgttggaagaa
ttgactgaaaccaagaacctttatagcgttcagcgtgggaaatacaaactgcaatcgcgt
agtggagctgttttgggaaaagttgagatacaacctcaaggctatgcctatattgtctcg
gaagagtttgataagccaattttggtatcgaaccgaaacctgaaccatgccatggaaggc
gacaaagttaaggttcagttattcgctatccgcaaaaaacaacaggttgaaggcgaagtc
gttgaaattgttgagcgtgccaaatcaacttttgtcggaaccatttccaaatcgaacaat
tatgcctttttcatcccttcaggaaaaaccgggttcgatttatttatcccgaacgaaaag
ctgaatggcgccaaagacggacaaaaggccattgccaaaatcaccgaatggccagcccga
gccaaaaatccgtttggcgaaattattgaggtactggggaatgttggcgacaacaatacc
gaaatgcatgctattctggctgaatacgacttgcctttgcggtttcctgataatgtgctg
aaagcagcagaaaagatacccgatgaaattccggaagaagaaatccgccgccgccgcgac
atgcgcggtgtaacaacatttacaatcgacccgaaagatgccaaggattttgacgatgca
ttatcaatccaaaaactcgaaaatggcttctgggaaattggtgttcatattgccgacgtt
tcgtattatgtaactcccggcacaatcctcgatgaagaagcctactcacgcgccacatcg
gtttatttggtcgatcgggttgtacctatgcttcccgaaaaattatcgaacggtgtttgt
tcccttcgcccgaatgaagataaactttgcttttcggctattttccaactgaacgatgat
tcagaaattcagcatcaatggtttggccgtacggtgattcattccgacaaacgatttgcc
tacgaagatgcacaggccattatcgaaagcggcgagggcgaactcaaagacgaagtgctt
acaatgaaccggctggcaattaagcttcgcgaagcccgtttcaagcacggatcgatagcc
tttgaacgggtcgaagtcaaattcgaaattgacgaaaatggcaaacctctttcggtgtat
ttcaaagaagcaaaagaaagtaaccagttggtcgaagaatttatgctcctggccaacaaa
agggtcgccgaattcattggcaaaactgacgacaaaagagcagcaaaaacatttgtttac
cgtattcacgacaaaccggatccggaaaaactgatgaatttcaatcatttcatccataaa
tttgggtacatattgcagttgggtactccagggcaaatttcaaaatcgatgaacctgctg
atgaccaatgtgaaagggaaaaatgagcaaaacgtaattgaaacgctggcgatccgcacc
atggccaaagccgtatattcaacccgaaacattgggcactacggactttctttcgagtat
tacacccatttcacttctcccatccggcgctatcccgatgtgatggtacatcgcctgctc
gaacgttatctcgcaggtggaaaaacagccaattcacagaaatacgaagacatgtgcaag
cactcgtctgacatggagaacaaagctgcgaatgccgaacgttcgtcgatcaagtacaag
caagttgaatttatgcaggataaaatcgggcaggaattttcaggagtcatttcaggagtt
accgattggggaatttatgttgaactcgaaaataagtgcgaaggaatggtttcggtaagc
acgctcgacgacgatttctatattttcgacgaaaagaactattgcctgatcgggcgccat
gctcaccgtaaattccagttgggcgatgtggtccaggttgaaattgccagggcaaatctg
gagaagaaacagctcgatttcagattagccaaagaaaaaaacagtgaaggaacgaaacag
ttttttcatcctgaaaataaaaaaaagggacgaagattataa
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