Aquipluma nitroreducens: AQPE_4565
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Entry
AQPE_4565 CDS
T09507
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
anf
Aquipluma nitroreducens
Pathway
anf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AQPE_4565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anf03021
]
AQPE_4565
03019 Messenger RNA biogenesis [BR:
anf03019
]
AQPE_4565
Transcription machinery [BR:
anf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AQPE_4565
Messenger RNA biogenesis [BR:
anf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AQPE_4565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
Motif
Other DBs
NCBI-ProteinID:
BBE20374
UniProt:
A0A5K7SGL9
LinkDB
All DBs
Position
complement(5106242..5108146)
Genome browser
AA seq
634 aa
AA seq
DB search
MYDIIELSRKLLPDLKEIAKELDIKKIESFKKQDLIYKILDTQAILASEKKTDDKKLKSP
RDINSKREESSVFKLFSRKKEEKPAEISEEKPAEKQDLEATVASAENEPRKEGKRELQIK
KRPRTEHIKAGSSNHNPNQNPNAKQNINPNQRQNPNQNPENNKKQNEQPKFNQNQKVRQE
ILLPEDPIETESVIVVAEPNEEQAVQTSNQEFKIEQLPQEETRPNDLTEKRNDNQNKKKW
ENRDNQGPKPQKQQNQEKPYEFDGIISNTGALEIMADGYGFLRSSDFNYLNSPDDIYVSQ
SQIKLFGLKTGDTVTGTIRPPKEGEKYFPLIKVIEINGRTPDYIRDRVPFEHLTPLFPNE
KFNLTGNGHDNLSTRIVDLFAPIGKGQRGLIVAQPKTGKTVLLKEIANAIAANNPEVYMM
VLLIDERPEEVTDMARHVNAEVISSTFDEPAERHVRVAGMVLEKAKRLVECGHDVVILLD
SITRLARAYNTVAPASGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALIDTGS
KMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAVDITSSSTRREDLLMNKNMLDKTYILRN
FLSDMNSIEAMEFIKTRIMRSDSIEEFLISMNDQ
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatattattgaattaagcagaaaacttcttcctgacttaaaagaaattgccaaa
gaacttgacattaaaaaaattgaatccttcaaaaaacaagatttaatttataaaattctt
gatactcaagctattttggcttcagaaaaaaaaactgatgataaaaaactaaagtctccg
agagatataaattcaaaacgcgaagaaagttctgtctttaaattatttagtagaaaaaag
gaggaaaagccagcggaaatttctgaagaaaagccagcagagaaacaagacttggaggca
actgttgcttcagcggaaaatgaaccacggaaagagggcaaaagagaacttcagatcaaa
aaaagaccacgtacagagcacattaaagccggatcttcgaatcacaatcccaatcagaat
ccgaatgcaaaacagaatataaatccgaatcagcgtcagaatccgaaccaaaatcctgaa
aataataaaaaacaaaacgaacagccaaaattcaatcaaaaccaaaaagtcagacaggaa
attttgcttcctgaagatccaattgaaacagaatcggtaatcgttgttgcagaaccgaat
gaagaacaggctgttcaaacatcgaatcaagagttcaaaatagagcaactacctcaagaa
gaaaccaggcctaatgatttgaccgaaaaacggaatgataatcagaacaaaaagaaatgg
gagaatcgcgataatcaaggtccaaaaccacaaaagcaacagaatcaggaaaaaccatac
gaatttgatggaatcataagtaacaccggtgctctggaaatcatggccgatggttatgga
tttcttcgttcatcagattttaattacctgaattcaccagatgatatttacgtctcacaa
tctcagatcaagctgtttggtttgaaaactggtgatacggttaccggaactattcgtccg
ccgaaagaaggtgagaaatatttcccgctgatcaaagtaattgaaattaacggaagaact
cccgattacatcagagatcgggtgccttttgaacatttaactcctttatttccaaacgaa
aaattcaatctgaccggaaacggccacgacaacctttcaacacgaatcgttgaccttttt
gcgcctatcgggaaaggacagcgtggtttgattgtggcacaaccaaaaacaggtaaaact
gtattgcttaaggaaatagccaatgcaattgcagccaacaatcctgaagtttacatgatg
gttttgctgattgacgagcgtccggaagaggtaaccgatatggcccgccacgtaaatgcg
gaagttatttcatcaacatttgacgagccagctgagcgtcacgtgcgtgttgccggtatg
gtactcgaaaaagccaaacgcctggttgaatgtggacacgatgttgtaatcttactcgat
tccatcacacgtttagcccgtgcttacaatacggttgcaccagcctcaggaaaagtatta
tcgggtggtgttgacgccaacgcattacacaaaccaaaacgtttctttggagctgcccgt
aacatcgaagaaggcggatcgctgacaattattgcaactgcactgatcgataccggatct
aaaatggacgaagtaatcttcgaagaattcaaaggaacaggtaatatggagttacaactc
gaccgcaaattatcgaacaaacgaattttcccagccgtggatattacttcttcaagcacc
cgtcgcgaagatttgctgatgaacaaaaatatgctcgacaaaacctatattttacgcaac
ttcctcagcgacatgaactctattgaggccatggaatttatcaaaactagaatcatgaga
agcgattcaattgaagaattcctgatttcgatgaacgatcaataa
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