Paraurantiacibacter namhicola: A6F65_01852
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Entry
A6F65_01852 CDS
T04447
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
anh
Paraurantiacibacter namhicola
Brite
KEGG Orthology (KO) [BR:
anh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
anh03009
]
A6F65_01852 (rlmD)
Enzymes [BR:
anh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
A6F65_01852 (rlmD)
Ribosome biogenesis [BR:
anh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
A6F65_01852 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Cons_hypoth95
FitA-like_RHH
Methyltransf_25
Motif
Other DBs
NCBI-ProteinID:
ANU08147
UniProt:
A0A1C7D9P0
LinkDB
All DBs
Position
complement(1862561..1863763)
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AA seq
400 aa
AA seq
DB search
MSETEKILRVAAKGDGVTASGRHVALAAPGDMVRADGSIEPGSHHAEPVCRHFGKCGGCE
LQHLDEASLAQFVTDRVAHAASGQGVEPAQLLPAHLSPPRSRRRATLHAARTGGAVQIGF
KERRGHKIVDMRECHILRPELFALIAPLRKLLSAKRGKFSSNIALTLADQGVDCALTGYS
PEGLEETEALTDFCRDHGLARLMLDYGYGPEAFWEPEPLTATLSGVPVALPPAAFLQATV
DGEDALTSAVSGWLGTSGQVVDLFSGLGTFAFALPAGTQVQAVEAARDAVQACQSAARRA
GRSLEAIHRDLFRNPMRAEELAGFDAAILDPPRAGAREQVAQLATSAVPKIAYVSCNPAS
WARDAATLQQAGYRLAELRPVGQFRWSTHVELASLFVREG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagaccgaaaaaatcctgcgcgttgccgccaagggcgacggcgtgactgccagc
gggcggcacgtggctttggccgcgcccggagacatggtgcgcgccgacgggagtattgag
ccaggttcgcaccatgccgagccggtatgccggcatttcggcaagtgcgggggctgcgaa
ttgcagcatctggacgaggcctcgctggcgcaattcgtgacggaccgcgtggcgcatgca
gcgagcgggcagggcgtggagcctgcgcagctgcttcccgcgcatctctctccgccgcgc
tctcgccgcagggccacgctgcacgcggcgcggacaggcggcgccgtgcagatcggcttc
aaggaaaggcgcgggcacaagatcgtggacatgcgcgaatgccacatcctgcgcccggag
ctgtttgccctgattgcgcccctgcgcaagctgctgtcggccaagcgcggcaagttcagc
agcaatatcgcgctgacgctggccgaccagggggtggactgcgcgctgaccggctattcg
cccgagggtctggaagagaccgaggcgctgaccgatttctgtcgggatcacggactggcg
cggctcatgctcgattacggctatggcccggaggctttctgggagcctgagccgctgaca
gctaccctgtccggcgtgccagtcgcgctgccgcctgccgctttccttcaggcaaccgtg
gacggcgaagacgcgctgacctcggccgtttccggatggctcgggacaagcgggcaggtt
gtggacctgttctccgggctcggaacctttgcctttgccctgccggcaggcacgcaggtg
caggcggtggaagcggcgcgcgatgcggtgcaggcgtgccagtcggctgcccgccgcgca
gggcgcagcttagaagccatccaccgcgacctgttccgcaatcccatgcgtgcagaggag
cttgcaggtttcgatgccgcgatcctcgatccgccgcgggccggggcgcgcgaacaggtg
gcgcagcttgccaccagcgccgtgccgaagattgcctatgtcagttgcaaccctgccagc
tgggcgcgcgatgcggcgacgctgcaacaggcaggctatcgcttggcggagctacgcccg
gtcgggcaattccgctggtccacccacgtggaactcgccagcctattcgtcagagagggc
tga
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