Aspergillus nidulans: ANIA_04412
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Entry
ANIA_04412 CDS
T01016
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ani
Aspergillus nidulans
Pathway
ani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ANIA_04412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ani03019
]
ANIA_04412
03041 Spliceosome [BR:
ani03041
]
ANIA_04412
03009 Ribosome biogenesis [BR:
ani03009
]
ANIA_04412
03016 Transfer RNA biogenesis [BR:
ani03016
]
ANIA_04412
Enzymes [BR:
ani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ANIA_04412
Messenger RNA biogenesis [BR:
ani03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
ANIA_04412
Spliceosome [BR:
ani03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
ANIA_04412
Complex C
U4/U6.U5 tri-SnRNP related factors
ANIA_04412
Ribosome biogenesis [BR:
ani03009
]
Eukaryotic type
Pre-60S particles
Helicases
ANIA_04412
Transfer RNA biogenesis [BR:
ani03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
ANIA_04412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_16
Motif
Other DBs
NCBI-GeneID:
2872204
NCBI-ProteinID:
XP_662016
UniProt:
Q5B4W8
LinkDB
All DBs
Position
III:2121122..2124553
Genome browser
AA seq
1073 aa
AA seq
DB search
MDELFDVFEDKPQAAQLSEPRRPKKEKSKKRQINGDVKENGENAKPKENIAPDVAEQENK
EEKSSGSDNNNQPETKRLRLEEEPEPVVADLFETAQEREIAGSAGLQAEKEAGPVVLSHQ
VRHQVAIPPKYPYVPISQHKPPENPARVWPFTLDPFQQVAVSSIQRGESVLVSAHTSAGK
TVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATCLVM
TTEILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIP
NAMQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKGVFREENFQKAM
SSIADKKGDDPADALAKRKGKGKDKKLNKGGTQEKDDIYKIVKMIMLKSLNPVIVFSFSK
RECEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRRGIGVHH
SGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFSQRWVTPSE
FVQMSGRAGRRGLDDRGIVIMMIGEEMDPAVAKEIVRGEQDRLNSAFHLGYNMILNLMRV
EGISPEFMLERCFYQFQNTAGLAGLEKELAELEEKRANMTISDEGTIREYYDIRTQIDQF
NDDVRAVISHPEYSVPFLTPGRLLHIKYKDFDFGWGVVVNIKKRKPQKNSEELTGHASYI
VDVLLRVADGSSSGTKTFEDLPQGVRPPKEGEKSQMEVVPLLLNCIQAISHVRMIVPKDL
QSKDSRTDMGKKVEQIKKRFPDGIAVLDPIEDMGIKDDEFKKTLRKIEVLESRLVTNPLH
NSPRLEELYEQYAEKLDLGNKIKATKKKISEGMAIQQLDELKCRKRVLRRFGFINEAEVV
QLKARVACEISTGDELMLSELLFNGFFNKLTPEQAAAVLSVFVFEEKTKETPPLSKEELA
KPLKEIQAQARIIAKVAQESKLAVSEEDYVQSFHWELMEVIYEWANGKSFADICGMTDVY
EGSLIRVFRRLEECLRQMAQAAKVMGSEELESKFETALTKVRRDIVAAQSLYL
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atggatgagcttttcgatgtcttcgaggataagccccaagcggcccagctctctgaaccc
agacgaccgaagaaagagaagagcaagaagcgccagataaacggcgatgtgaaggaaaac
ggggaaaatgcaaaacccaaggagaatatcgctcccgatgtcgcggaacaagaaaacaag
gaagagaagtcttcaggctcggataacaacaatcagccagagacaaagcgattgcgatta
gaagaagagccggaacccgttgtcgcagacttgttcgaaactgcgcaagagcgcgagatt
gcaggatctgcagggcttcaagctgagaaagaagcaggcccagtggtcttgtcccaccag
gtccggcatcaagtcgccattccgccgaagtatccttacgttccaatctctcaacacaaa
cctccggagaaccccgcgagagtatggccgtttacgctcgatccattccagcaggttgct
gtctcgtcgattcagagaggagaaagtgtgctggtatcggctcataccagtgcgggaaag
acggtggtcgcggaatatgctattgctcagagtttgaagaacaatcagagggtcatctat
acaagtcctatcaaagccctgagtaatcagaaataccgggagtttgcagcggaatttggc
gacgttggtctaatgacgggtgatgtgacaatcaaccctactgctacttgcttggttatg
acgaccgagattctgcggtctatgttgtatcgcggctccgagatcatgcgcgaagtcgcc
tgggttgtcttcgacgagattcattacatgcgagatgctacgcgaggtgttgtttgggaa
gagaccattattctacttccagataaggttcgatacgtatttctgtccgcaacaattccc
aatgcgatgcagttcgccgagtggatcacaaaaatgcacaaccaaccctgtcacgttgta
tatactgacttccggcctacgccgctgcaacattatttcttccccgctggctccgaagga
atgcatctaatcgtcgacgagaagggtgttttccgagaggagaacttccagaaggcaatg
agctccatcgcagacaagaaaggtgatgatccagcggatgcgcttgccaaacggaaaggc
aaaggcaaagacaaaaaactcaacaaaggcggaactcaggagaaagatgatatatataaa
attgtcaagatgattatgttgaagagtctgaatcctgttatcgtcttcagtttcagcaag
cgcgagtgtgaattctacgctctgaagatgaagagcctggccttcaatgacgactcggaa
aaggagatggtatcaaaggtcttcaacagtgcaattgaaatgctatctgaagaagatcgc
aatctacctcagattcaaaacatcctgccccttctacggagaggtattggtgtccatcac
tccggactgcttcccatcctcaaggagaccatcgaaattctgttccaagaagggcttatc
aaggtcctgttcgccactgaaacattctctatcggtcttaacatgccagcaaagaccgtc
gtctttaccagcgttcgaaagttcgacggcttcagccagcgctgggtcactccatctgag
tttgtgcagatgtctggccgtgccggacgtagaggtctcgacgaccgtggtattgttatc
atgatgataggggaagaaatggatcctgccgtggccaaggaaattgtgcgtggagaacag
gaccgtctaaattccgctttccatctgggctacaacatgattctgaatctcatgcgtgta
gagggtatatcgcctgagttcatgcttgaaaggtgtttctatcaattccagaacactgca
ggcctggcgggccttgaaaaggaacttgctgaactggaagaaaaaagagccaacatgacc
atttcggatgaaggaaccatccgcgaatactacgatattcggacgcagattgaccaattc
aacgatgatgtacgggcggtcatcagccatcctgagtactctgtgcccttccttacgcct
gggcgcctgttgcacatcaaatacaaagacttcgactttggatggggggtagttgttaac
atcaagaaacgcaaaccccagaagaactcagaggagctgaccggtcatgccagttacatt
gttgatgttcttttgagggttgctgatgggtcatcttctggtacaaagactttcgaagac
ctgccacagggtgtccgtccaccgaaagagggcgagaaatcgcaaatggaagttgttcca
ctccttcttaattgcatccaagctatctcccacgtgcggatgattgtgcccaaggatttg
caatccaaggattcgcggacggatatgggaaagaaggtagagcaaatcaagaagcgattc
cctgatggtattgcagtcctcgaccccattgaagacatgggcatcaaggatgacgaattc
aaaaagactttgaggaaaattgaagttctcgagtcgcgcttggttacgaaccctttgcac
aattcgccgcgcctagaggagctttatgaacaatacgcagagaaattggatttagggaat
aagatcaaagcgaccaagaagaagatatctgagggcatggcgatccaacagttggacgaa
ctgaaatgccgaaaacgcgtcctccgtcgcttcggtttcatcaatgaggccgaagttgtg
cagttgaaggcacgcgtggcgtgtgaaattagcactggggacgagttaatgctcagcgag
ctcctcttcaacggtttcttcaataaactgactccagaacaagcagcggccgttctgagt
gtcttcgtattcgaagaaaagacaaaagaaacaccgccgctgtcaaaagaagagctcgca
aagccgcttaaagagatacaagcacaagcacggattattgctaaagtcgcgcaagagtcg
aagctggctgtcagcgaggaagactacgtccaaagtttccattgggaactaatggaggtg
atctacgaatgggccaacgggaagtcatttgctgatatttgtggtatgacagatgtctat
gaaggcagcttgatccgtgtcttccgtcgcttggaagaatgtctacggcaaatggctcag
gcagcgaaggttatgggaagcgaagagcttgaaagcaaatttgagaccgcattgacaaag
gttcgcagggacattgtcgctgcgcagtctttgtatctgtag
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