Candidatus Arsenophonus nilaparvatae: WH390_11005
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Entry
WH390_11005 CDS
T12093
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aniv Candidatus Arsenophonus nilaparvatae
Pathway
aniv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aniv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WH390_11005 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aniv03021
]
WH390_11005 (rho)
03019 Messenger RNA biogenesis [BR:
aniv03019
]
WH390_11005 (rho)
Transcription machinery [BR:
aniv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WH390_11005 (rho)
Messenger RNA biogenesis [BR:
aniv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WH390_11005 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
XHY24067
UniProt:
A0ACN4XS72
LinkDB
All DBs
Position
complement(2331597..2332856)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIANNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTLPDELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDFMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtatctgaattgattactcttggcgaaagt
atggggctagagaacctagcccgcatgagaaaacaggatattattttctcgattttgaag
cagcatgcaaaaagtggagaggatatttttggtgatggcgtgctagaaattttgcaggat
ggatttggattccttcgttctgctgacagctcttatctagcaggtcctgatgatatttat
gtttctcctagtcagattcgtcgctttaatctacgaacaggagataccatatcaggaaaa
attcgtcctcctaaggaaggcgaacgctattttgccctactaaaagttaatgaagtcaat
tttgataaacctgaaaacgcccgtagtaaaatcctgtttgaaaacctaacaccgctgcat
gctaataaccgtctacgtatggagcgaggcaatggttcaacagaagatttgactgctcgt
gttctggatttggccgcaccgattgggcgtgggcagcgtggtttaattgttgctccacca
aaagcaggtaaaaccatgttattgcagaatattgcagctaatattgccaataattatcca
gactgtgttttgatggtgttgctaattgatgagcgaccagaagaagtgaccgaaatgcaa
cgcctggttaaaggtgaggtcattgcatcaacctttgatgaacctgcatctcgtcatgtt
caggttgctgaaatggttatagaaaaagctaagcgcttagttgaacacaaaaaagatgtc
atcattcttttagattcgattacgcgtcttgctcgtgcttacaacacagtggttccttcc
tctggaaaagtattgactggtggggtggatgcaaatgctttgcaccgtccgaaacgtttt
tttggtgctgcacgtaatgtagaagaaggtggaagcctaacgataattgctacagcatta
gttgataccggttccaaaatggatgaagtaatctatgaggagtttaaaggcaccggcaat
atggagctacatttgtcgcggaaaatagcggaaaaacgtgttttcccagcgattgattat
aatcgttctggtactcgtaaggaagaattattgaccttaccggatgagttacagaagatg
tggatattgcgtaaaattattcatcctatgggtgaaattgatgcaatggaatttttaatt
aataaattggcaatgacgaaaacgaacgatgaatttttcgattttatgaagcgttcttaa
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