Aminobacter niigataensis: AMD1_0018
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Entry
AMD1_0018 CDS
T09606
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
anj
Aminobacter niigataensis
Pathway
anj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMD1_0018 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anj03019
]
AMD1_0018 (pnp)
03016 Transfer RNA biogenesis [BR:
anj03016
]
AMD1_0018 (pnp)
Enzymes [BR:
anj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMD1_0018 (pnp)
Messenger RNA biogenesis [BR:
anj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMD1_0018 (pnp)
Transfer RNA biogenesis [BR:
anj03016
]
Prokaryotic type
tRNA degradation factors
AMD1_0018 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
CAI2931306
LinkDB
All DBs
Position
AMD1:complement(15902..18049)
Genome browser
AA seq
715 aa
AA seq
DB search
MFKHHKVEIEWAGRPLILETGKIARQADAAVLATYGETVVLATVVSAKEPKPGFDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFAAGYKNDTQVVITVVQH
DLENDPDILSIVATSAALTLSGVPFMGPIGGARVGYINGEYVLNPHIDEMQESKLDLVVA
GTDAAVLMVESEAKELAEDIMLGAVMFGHRGFQPVIDAIIKLAEVAAKDPRDFTAPDYSE
LEAEMLKIVEGELRDAYKITDKQARYTAVDAVKTKVKAAFAAEGEEAPKWSADKVATVFK
ELQAKIVRWNILDTGSRIDGRDLKTVRQIVSEVGVLPRTHGSSLFTRGETQALVVATLGT
GEDEQYVDALTGMYKEKFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAVRPMLPAA
EQFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLQKPVAGIAMGLIKEGERFAVL
SDILGDEDHLGDMDFKVAGTTNGITALQMDIKIDGITEEIMNIALGQAKDGRLHILGEMA
TALSEGRSELGEFAPRIEVMHIPTDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIA
SSNAKEIEAAKKWIHTIVAEPEVGEIYEGTVVKTADFGAFVNFFGPRDGLVHISQLANDR
VAKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQETGKEIARDKKAEGEESAA
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacaccacaaagtcgaaatcgagtgggccggccgtccgctcatcctcgagacc
ggcaagatcgcgcgtcaggctgacgccgccgttctcgccacctacggcgagaccgtcgtt
ctcgcgacggtcgtttcggccaaggagccgaagccgggcttcgacttcttcccgctgacc
gtcaactaccaggaaaagacctacgcagccggcaagatccccggcggctatttcaagcgt
gaaggccgtccgagcgaaaaggagacgctggtctcccgcctgatcgaccgcccgatccgt
ccgctcttcgccgccggctacaagaacgacacccaggtcgtcataacggttgtccagcac
gacctcgaaaacgatcccgatatcctgtcgatcgttgccacctcggctgccttgacgctc
tcgggcgtgcctttcatgggcccgatcggtggcgcgcgcgtcggctatatcaacggcgaa
tacgtgctcaacccgcacatcgacgagatgcaggaatccaagctcgacctcgttgtcgcc
ggcaccgatgccgccgtgctgatggtcgagtcggaagccaaggaactggccgaagacatc
atgctcggcgccgtcatgttcggtcaccgtggcttccagccggtcatcgacgccatcatc
aagctggccgaagtggctgccaaggatccgcgcgacttcaccgcgccggactattccgag
cttgaagccgagatgctgaagatcgtcgaaggcgaactgcgcgacgcctacaagatcacc
gacaagcaggcccgctacaccgccgtcgacgcggtcaagaccaaggtcaaggcagccttc
gccgctgaaggcgaagaagctccgaagtggtcggccgacaaggtcgcaaccgtgttcaag
gaactccaggccaagatcgtgcgctggaacatcctcgacaccggttcgcgcatcgatggc
cgcgacctcaagacggtccgccagatcgtttccgaagtcggcgtcctgccgcgcacccac
ggttcgtcgctgttcacccgcggcgagacccaggcgcttgtcgttgccacgctcggcacc
ggcgaagacgagcagtatgtcgacgcgctgaccggcatgtacaaggagaagttcctcctt
cactacaacttcccgccctattcggttggcgaaaccggccgcatgggctcgcccggccgc
cgcgaaatcggccacggcaagctcgcctggcgcgctgtccgcccgatgctgccggccgcc
gagcagttcccctacacgctgcgcgtcgtctccgagatcaccgagtccaacggctcgtcg
tcgatggccaccgtctgcggcacctcgctggcgctgatggatgcgggcgttccgctgcag
aagccggttgccggcatcgccatgggcctgatcaaggaaggcgagcgcttcgccgtcctg
tcggacatcctcggcgacgaggatcacctcggcgacatggacttcaaggttgccggcacg
accaacggcatcaccgcgctgcagatggacatcaagatcgacggtatcaccgaagagatc
atgaacatcgcgctcggccaggccaaggacggccgcctgcacatcctcggcgaaatggcc
acggccctgtcggaaggccgctcggaactgggcgaattcgctccgcgcatcgaggtcatg
cacatcccgaccgacaagatccgtgaagtcatcggctcgggcggcaaggtcatccgcgag
atcgtcgaaaagaccggcgccaagatcaacatcgaggacgacggcacggtcaagatcgct
tcgtcgaacgccaaggaaatcgaggcggccaagaagtggatccacaccatcgtggctgag
ccggaagtcggcgagatctacgaaggcacggtcgtcaagaccgccgacttcggcgccttc
gtcaacttcttcggcccgcgcgacggcctcgtccacatctcgcagcttgccaacgaccgc
gttgccaagacctcggatgtggtcaaggaaggcgacaaggtctgggtcaagctgatgggc
ttcgacgagcgcggcaaggtccgcctgtcgatgaaggtcgtcgaccaggaaacgggcaag
gaaattgctcgcgacaagaaggctgaaggcgaagaatccgccgcctga
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