Aminobacter niigataensis: AMD1_0118
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Entry
AMD1_0118 CDS
T09606
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
anj
Aminobacter niigataensis
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anj03032
]
AMD1_0118 (gyrB)
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_0118 (gyrB)
Enzymes [BR:
anj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AMD1_0118 (gyrB)
DNA replication proteins [BR:
anj03032
]
Prokaryotic type
DNA Topoisomerases
AMD1_0118 (gyrB)
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMD1_0118 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
CAI2931406
LinkDB
All DBs
Position
AMD1:107594..110041
Genome browser
AA seq
815 aa
AA seq
DB search
MSDQSENLPGAEAEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDE
ALAGHATLVTVSLNPDGSVTVTDNGRGIPTDIHTGEGISAAEVIMTQLHAGGKFDQNSYK
VSGGLHGVGVSVVNALSVWLKLKIRRKGQIHEMSFTHGNADAPLKVTGVAGDETGTEVTF
LPSSETFTMTEFDFGTLEHRLRELAFLNSGVRILLSDKRHADIKSQELLYDGGLIEFVKY
LDRAKKPLIGAPIAIRAERDGITVEVAMWWNDSYHENVLAFTNNIPQRDGGTHLAGFRGA
LTRQVTGYAETSGIAKKEKVSITADDTREGLTAVLSVKVPDPKFSSQTKDKLVSSEVRPV
VESLVNEALGTWFEEHPAEAKTLIAKVVEAAAAREAARKARELTRRKGVLDITSLPGKLA
DCQERDPAKSEIFIVEGDSAGGSAKSGRSRQNQAILPLRGKILNVERARFDRMLSSEMIG
TLITALGTSIGKDEFNADKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIERGHLY
IAQPPLYKVMRGKSSQYLKDESAFEAYLVDVGLDEASLTLSSGEVRTGQDLRAAVADALG
VRTLIDGLHTRYSRPVVEQAAIAGALNPDIFNDLGRAKAMAETIAQRLDLISEDIERGWT
GHISTDNDGSGGYVFERTLRSVKESVHLDMALINSADARALDRYAGRLTELYAQPPVLRR
KETSEALAGPLALLNAVFASGRKGLTMQRYKGLGEMNAEQLWETTLDPNVRSLLQVKVND
ATDADALFARLMGDEVEPRRDFIQENALSVANLDV
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccagtccgagaaccttcccggcgccgaggccgagtacggcgcagattccatc
aaggttttgaaggggttggatgcggtccgcaagcgtccgggcatgtatatcggtgacacc
gacgacggctcgggcctgcaccacatggtctacgaggtcgtcgacaacgccatcgacgag
gcgctggccggccacgcgacactggtcacggtctcgctcaatcccgatggttcggtgacc
gtgaccgacaacggccgcggcattcctaccgacatccacaccggcgaaggcatctcggcg
gctgaggtcatcatgacgcagctgcatgccggcggtaagttcgaccagaattcctacaag
gtttcgggcggcctgcatggcgtcggcgtgtccgtcgtcaacgcgctgtcggtctggctg
aagctcaagatccgccgcaagggccagatccacgagatgagcttcacgcatggcaatgcc
gatgcgccgctgaaggtgacgggcgttgccggcgacgagaccggcaccgaggtgacgttc
ctgccctcgtccgaaacattcaccatgaccgaattcgacttcggcacgctggagcaccgg
ctgcgcgagctcgccttcctgaattcgggtgtccgcatcctgttgtccgacaagcgccac
gccgacatcaagagccaggaactgctttatgacggcggcctgatcgagttcgtgaagtat
ctcgaccgtgccaagaagccgctcatcggcgctccgatcgcgatcagggcggagcgcgac
ggcatcaccgtcgaggtggcgatgtggtggaacgacagctaccacgagaacgtactggcc
ttcaccaacaacatcccgcagcgcgacggcggcacccatctggccggcttccgcggcgcg
ctgacgcgccaggtgaccggctacgccgaaacctcgggtatcgccaagaaagaaaaggta
tcgattaccgccgacgacacccgcgagggcctgacggcggtgctttcggtcaaggttccc
gatccgaagttctcgtcgcagaccaaggacaagctggtttcgtcggaagtccgcccggtg
gtggagagcctggtcaacgaggcgctcggcacctggttcgaggaacacccggcagaagcc
aagacgctgatcgccaaggtggtggaagccgccgcggcacgcgaagccgcccgcaaggcg
cgcgagctgacccgccgcaagggcgtgctcgacatcacctcgctgcccggcaagctcgcc
gactgccaggagcgcgatccagccaagtcggaaatcttcatcgtcgagggtgactccgcc
ggcggctcggccaagagcggacgctcgcgccagaaccaggcgatcctgccgctgcgtggc
aagatcctcaacgtcgagcgcgcgcgcttcgaccgcatgctgtcgtcggaaatgatcggc
acgctgatcaccgcgctgggcacgtcgatcggcaaggacgagttcaacgccgacaagctg
cgctaccacaagatcatcatcatgaccgacgccgacgtcgacggcgcccacatccgtacg
ctgctgctgacgttcttcttccgccagatgccggagctgatcgagcgcgggcacctctat
atcgcccagccgccgctctacaaggtgatgcgcggaaagagttcgcagtacctcaaggac
gaaagtgccttcgaggcctatcttgtcgacgtcggcctcgacgaggcctcgctgacgctg
tcgtcgggtgaagtgcggaccggccaggacctgcgcgcggcggtggcagacgcgctcggg
gtgcgcacgctgatcgacggcctgcacacccgctactcgcgcccggtggtcgagcaggcg
gcgattgccggcgcgctcaatccagacatcttcaacgacctcggccgcgccaaggcgatg
gccgaaacgatcgcccagcgcctcgacctgatttcggaggacatcgagcgcggctggacc
ggccacatctcgaccgacaatgacggctccggcggctatgtgttcgaacgcacgctgcgc
agcgtcaaggagagcgtgcatctcgacatggcgctgatcaactcggcagacgcgcgtgcg
ctcgaccgctatgccggtcgtctcaccgagctttatgcccagccgccggtgctgcgccgc
aaggaaacctcggaagccctggcgggaccgctggcgttgctgaacgcggtgttcgcttcg
ggccgcaaaggcctgaccatgcagcgctacaagggcctgggcgaaatgaacgccgagcag
ctgtgggaaaccacgctcgatccgaacgtgcgctcgctgctgcaggtgaaggtcaacgac
gccaccgacgccgatgcgctgttcgcacgcctgatgggcgacgaggtcgaaccgcgccgc
gacttcatccaggagaacgcgctgagcgtggccaacctggacgtttga
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