Aminobacter niigataensis: AMD1_0230
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Entry
AMD1_0230 CDS
T09606
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
anj
Aminobacter niigataensis
Pathway
anj02020
Two-component system
anj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AMD1_0230 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AMD1_0230 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anj03021
]
AMD1_0230 (rpoN)
Transcription machinery [BR:
anj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMD1_0230 (rpoN)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Arg_repressor
HTH_38
Motif
Other DBs
NCBI-ProteinID:
CAI2931518
LinkDB
All DBs
Position
AMD1:complement(221101..222636)
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AA seq
511 aa
AA seq
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MALSAKLQLRQSQSLVMTPQLMQSIRLLQFTHTELERFIDDEIERNPLLERAEAPEDAPG
DQFPKIETQGEANAAPSDDWFEGEAGWSSEAISEKLDTSLENLFPDDPGAVERMGPDLAM
QWKSASSGTGSGGASEGFDMEDMAAAAVTLRDHVGEQISFAFVDPAERLVASELTDWLDE
AGYFRGEPVEIAGRFGVDEAFVLRVLASCQGFDPAGLFARNLAECLRIQLGRRDRLDPAM
AALVDNLELLAKRDFQSLKRICGVDEEDLLAMLAEIRALDPRPGGGFVGGAADTIVPDVE
VRQAADGSWAVELNPETLPRVLVDQVYFAEVTGRTKDQGERNFLSECLQNANWLTRSLDQ
RAKTILKVAAEIVRQQDAFLVHGVRHLRPLNLRTVADAIGMHESTVSRVTANKYMLTTRG
VFELRYFFTASIASAEGGDAHSSEAVRDRIRQMIEEEQAADVLSDDAIVDILKKSGVDIA
RRTVAKYREGMNIASSVQRRREKRAIAGTAN
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcggcaaaactacagctacggcagtcgcagtccctggtgatgacgccccag
ctgatgcagtcgatccggctgctgcagttcacccacaccgagcttgagcgtttcatcgac
gacgagatcgagcgcaatccgctgttggaacgcgccgaagcgcccgaagacgcgcccggc
gaccagtttcccaagattgaaacgcaaggcgaggccaacgctgcgccgagcgacgactgg
ttcgaaggcgaggccggctggagttccgaggccatctccgaaaagctcgacacttcgctc
gagaacctgtttcccgacgatcccggtgccgtcgagcgaatgggcccggaccttgccatg
cagtggaagtcggcctcctctggcaccggctcgggcggcgcgtccgaaggcttcgacatg
gaggatatggccgctgcagccgttaccctgcgcgatcatgtcggcgagcagatttcattc
gcctttgtcgatccggcggagcggctggtcgcttccgaactgaccgactggctcgacgag
gcgggctacttccgtggcgagcctgtcgagatcgccggccggttcggcgtcgacgaggca
tttgtgctgagggtacttgccagctgccagggcttcgatccggctggcctgtttgcgcgc
aaccttgccgagtgcctgcgcatccagcttgggcgccgcgatcgcctcgatccggcgatg
gcggcattggtcgacaatctcgaactgctggccaagcgcgatttccagagcctcaagcgc
atctgcggcgtcgacgaggaggatctgctcgccatgctggccgagatccgtgccctcgac
cccaggccgggcggcggctttgtcggaggtgctgccgacaccatcgtgcccgacgtcgag
gtgcgccaggccgccgacggcagctgggccgtagaactcaaccccgagaccttgccacgc
gtcctggtcgaccaggtctatttcgccgaggtgacgggccgcaccaaggaccaaggcgag
cgcaacttcctctccgagtgcctgcagaatgccaactggctgacgcgcagcctcgaccag
cgcgccaagaccatcctcaaggtcgccgccgagatcgtccgccagcaggacgccttcctc
gtccatggcgtgcgccatctcaggcctctcaacctgcgcacggtcgccgacgccatcggc
atgcatgaatcgacggtcagccgcgtcacggccaacaaatacatgctgacgacgcgcggc
gtcttcgaactgcgctacttcttcaccgcctcgatcgcctctgccgagggcggcgacgcc
cactcttcagaggcagtcagggaccggattcgacagatgatcgaggaggagcaggccgct
gacgtgctttcggacgatgccattgtggatatcttgaagaaaagtggcgtcgacatcgct
cgccgcaccgtcgcaaaatatcgtgagggcatgaacatcgcctcgtcggtgcagcgccgg
cgcgaaaagcgcgctatagcaggtaccgcgaactag
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