Aminobacter niigataensis: AMD1_0270
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Entry
AMD1_0270 CDS
T09606
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
anj
Aminobacter niigataensis
Pathway
anj03030
DNA replication
anj03410
Base excision repair
anj03420
Nucleotide excision repair
anj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMD1_0270 (polA)
03410 Base excision repair
AMD1_0270 (polA)
03420 Nucleotide excision repair
AMD1_0270 (polA)
03440 Homologous recombination
AMD1_0270 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anj03032
]
AMD1_0270 (polA)
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_0270 (polA)
Enzymes [BR:
anj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMD1_0270 (polA)
DNA replication proteins [BR:
anj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AMD1_0270 (polA)
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AMD1_0270 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AMD1_0270 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
POR
HHH
IMS_HHH
DprA_N
Motif
Other DBs
NCBI-ProteinID:
CAI2931558
LinkDB
All DBs
Position
AMD1:255610..258588
Genome browser
AA seq
992 aa
AA seq
DB search
MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMLDARNTEAGVV
PTHFAVIFDYSSKTFRNELYPEYKANRSAPPEDLIPQFGLIRQATKAFELPCIEMEGFEA
DDLIATYARLACEAGGDTTIVSSDKDLMQLVGPSVSMYDPMKDRQINVPEVVEKWGVPPE
KMIDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDTLLARAAEIKQDKRRQSIIDNA
DKARISRELVRLKVDVPVTDVLEDFVLQPPNGPKLIGFLKTMEFTSLTRRVAEATGTEAG
EVEAVPVSVQWGADAHGPDVGSGAAPAATAAAPAARANGGNAAAAAPSSASAESGNMHDT
PTALANKIAERAASQKFDHAAYVTIRDLATLNNWIAEARQAGVVAFDTKTTSLDPMQAEL
VGFSLATAPGRAVYVPLAHKSGRGDLLGGGLVENQVPVRDAIAALKALLEDASVLKVAQN
LKYDLVVLDRHGIDVHSFDDTMLLSYVLDGGTNGGHGTDSLSEKWLGHTPIPFKEIAGSG
RNVVGFDQVDIDKATAYAAEDADVALRLWRVLKPRLAAKGVVSVYERLERPLVPVLARME
QRGISVDRQILSRLSGELAQGAARLEDEINAIAGERFNIGSPKQLGDILFGRMGLPGGTK
TKTGQWSTSAQVLEDLAAEGHELPRKIVDWRQMTKLKSTYTDALPGFINPETKRVHTSYA
LAATTTGRLSSSDPNLQNIPIRTTEGRKIRTAFIADKGNKLISADYSQIELRVLAHVADI
GQLKQAFADGVDIHAMTASEMFSVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIP
REEASDYIRKYFERFPGIRAYMDETKAFCRENGYVETIFGRRIHYPEIRSSNPSVRAFNE
RASINARLQGTAADIIRRAMIRMEDALVAARLSARMLLQVHDELIFETVENEVEATIPVV
RHVMENAAMPAVSMSVPLHVDAHGANSWDEAH
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaggcgatcatctcttccttgtcgacggctccggctacatcttccgcgcctat
cacgcgctgccgccgctgacccgcaagtccgacggccttccggtcggtgccgtctcaggt
ttctgcaacatgttgtggaagctgatgctcgacgcgcgcaacaccgaagctggggtcgtg
ccgacgcatttcgcggtcatcttcgactattcctcgaagaccttccgcaacgagctctac
cccgagtacaaggccaaccgctcggcgccgccggaagacctgatcccgcaattcggcctg
atccggcaggcgaccaaggccttcgagctgccctgcatcgagatggaaggctttgaggcc
gacgatttgatcgccacctatgcccggctcgcctgcgaagccggcggcgacaccaccatc
gtctcctccgacaaggacctgatgcagctcgtcggtcccagcgtgtcgatgtacgacccg
atgaaggatcgccagatcaacgttcccgaggttgtcgagaagtggggcgtgccgcccgag
aagatgatcgacctgcaggcgctgaccggcgactcggtcgataacgtgccgggcgtgccc
ggcatcggcccaaagacggcggcacagctgctcgagcagttcggcgacctcgacacgctg
ctcgcgcgcgccgccgagatcaagcaggacaagcgccgccagtcgatcatcgacaacgcc
gacaaggcgcgcatttcgcgcgagctggtgcggctcaaggtcgacgtgccggtgaccgac
gtgctcgaagacttcgtgctgcagccgcccaacgggccgaagctgatcggcttcctcaag
acgatggaattcacctcgctgacgcgccgcgtcgccgaggccaccggcacggaggccggc
gaggtcgaggctgtgcctgtcagcgtgcagtggggcgccgacgcgcatgggcctgacgtc
ggttcgggagcggcaccggcggcgaccgccgcggctcctgcagcgcgtgcgaacggaggc
aacgctgctgccgcagccccctcgtccgcctctgccgaaagcggcaacatgcacgacact
cccaccgccctcgccaacaagatcgccgaacgggcagcctcgcaaaagttcgaccatgcc
gcctatgtcaccatccgcgacctggcgaccctgaacaactggatcgccgaggcaagacag
gccggcgtcgtcgccttcgacaccaaaaccacctcgctcgacccgatgcaggccgaactg
gtcggcttttccctggcaactgcacccggtcgcgccgtctatgtgccgctggcccacaag
agcggccgcggcgatcttctcggcggcggactggtcgagaaccaggtacccgtgcgcgac
gcgatcgccgcactcaaggcgctgctcgaagacgcctccgtgctcaaggtggcgcagaac
ctgaaatacgatctggtggtgctggaccggcacggcatcgacgtgcactcgttcgacgac
acgatgctgttgtcttacgtgctcgacggcggcaccaatggcggccacggaacggattcc
ctgtcggagaagtggctcggccacacgccgatcccgttcaaggagattgccggttcgggc
aggaatgtcgtcggcttcgaccaggtcgacatcgacaaggcgaccgcctatgcggccgag
gacgccgacgtggcgctgcggctgtggcgcgtgctcaagccgcgcctcgctgccaagggt
gtggtctcggtctacgagcggctggaacggccgctggtgccggtgctggcgcgcatggaa
cagcgcggcatctcggtcgaccgccagatcctgtcgcggctttcgggcgaactggcccag
ggtgctgcccgtctcgaagacgaaatcaacgcaatcgccggcgagcgcttcaacatcggc
tcgcccaagcagctcggcgacatcctgttcggccgaatgggcctgcccggcggaaccaag
accaagacgggccagtggtcgacatcggcgcaggtgctggaagaccttgccgccgaaggc
cacgagctgccgcgcaagatcgtcgactggcgccagatgaccaagctcaagtcgacctat
acagacgccctgcccggcttcatcaatcctgagaccaagcgcgtccacacctcctacgcg
ctcgccgccactacgacgggacggctgtcgtcgtcggacccgaacctgcagaacatcccg
atccgcaccaccgaaggccgcaagatccgcactgccttcattgccgacaagggcaacaag
ctgatctcggcagactacagccagatcgagctgcgcgtgcttgcccatgtcgccgacatc
ggccagctcaagcaggccttcgccgacggcgtcgacatccatgcgatgacggcgtccgag
atgttctcggtgcccgtggaaggcatgccgtcggagatccgccgccgggccaaggcgatc
aatttcggcatcatctacggcatctcggccttcggcctcgccaaccagctgtcgatcccg
cgcgaggaagcctccgactatatcaggaagtatttcgagcgcttccccggcatccgcgcc
tacatggacgagaccaaggcgttctgccgcgagaacggctatgtcgagaccatcttcggc
cgccgcatccactatccggaaatccggtcgtccaatccctcggtgcgcgccttcaacgaa
cgcgcctcgatcaacgcacgcctgcagggtacggccgccgacatcatccgccgcgcaatg
atccgcatggaagacgctcttgtcgctgccagactgtcggctcggatgctgctgcaggtg
cacgacgaactgatcttcgagaccgtcgagaacgaggtcgaggcgacgatccccgtcgtc
cgccatgtcatggaaaacgccgccatgccggcggtgtcgatgtcggtgccgctgcatgtc
gacgcccatggcgccaacagctgggacgaggcgcactga
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