Aminobacter niigataensis: AMD1_1016
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Entry
AMD1_1016 CDS
T09606
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
anj
Aminobacter niigataensis
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
anj03016
]
AMD1_1016
Enzymes [BR:
anj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AMD1_1016
Transfer RNA biogenesis [BR:
anj03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AMD1_1016
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
CAI2932298
LinkDB
All DBs
Position
AMD1:complement(1006019..1006615)
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AA seq
198 aa
AA seq
DB search
MPRLFTALEIPRDAALSLSLLRGGLSGARWIDVENYHLTLRFIGDVEGHVADEIVEAIDR
VDRPGFPLTLSGVGAFGQKKPHAVWAGVTPSPELNALQAEIERICKRLGVPSDPRKFTPH
VTLARLRNTSPLDVAHYLSARGNFATVPFRVGRFVLMSSRDSVGGGPYIVEEAWPLNGSD
AGSLIRSASASEASRIMR
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgacttttcaccgccctcgaaattccgcgtgatgccgcgttgtcgctctccctg
ctcaggggcggcctgtcgggcgcccgctggatcgacgtcgaaaactaccacctcaccttg
cgcttcatcggcgatgtcgaaggccatgttgccgacgagatcgtcgaggccatcgaccgt
gtcgaccggccaggctttccgctgacgctttcaggtgtcggcgccttcgggcagaagaag
ccgcatgcggtctgggccggcgtcacgccctcgccggaactcaacgcactgcaagctgag
atcgaacgcatctgcaagcgcctcggcgtcccgtccgacccgcgcaaattcaccccgcat
gtgacgctggcacggctccgcaacaccagcccgctcgacgtcgcgcactatctttcggca
cgcggcaacttcgccactgtgcccttccgcgtcggccgcttcgtgctgatgtcgtcgcgc
gactcggtcggcggcggcccctacatcgtcgaggaagcgtggccgctcaatggctcggac
gccggttcgctgatccggtcggcaagcgcttccgaagcctcgcggatcatgcggtag
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