Aminobacter niigataensis: AMD1_2450
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Entry
AMD1_2450 CDS
T09606
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
anj
Aminobacter niigataensis
Pathway
anj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AMD1_2450 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anj03021
]
AMD1_2450 (rpoD)
Transcription machinery [BR:
anj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AMD1_2450 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
Imm3
EFhand_Ca_insen
DUF4351
Motif
Other DBs
NCBI-ProteinID:
CAI2933724
LinkDB
All DBs
Position
AMD1:2345035..2347056
Genome browser
AA seq
673 aa
AA seq
DB search
MATKEKEEVETEREGATDGPLLDLSDDAVKKMIKVAKKRGYVTMDELNAVLPSEEVTSEQ
IEDTMAMLSDMGINVVEDDEQGEEAEAAEGDAEEDANELAEQTGTAVAATTTKKEPTDRT
DDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNEA
KILLREIIDLEATYAGPEAKQAPIVERVDEDAKPKADEKSRRGGRDEEDDVTNVGGDTRG
EEDEEEDDEASLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAGTLSPS
QDRRLKELKDQLVKAVKSLSLNNARIEALVEQLYDINKRLVQNEGKLLRLAESYGVRREE
FLREYQGSELDPNWIRSISNLSSRGWKEFTKNEKDAIRDLRAEIQNLATETAISILEFRK
IVNQVQKGEREAAMAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTP
EELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQANL
RETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKLRSFLDS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaagaaaaggaagaggtcgagaccgaacgcgaaggcgcaactgacggccct
ttgctcgacctttccgatgacgctgtcaagaagatgatcaaggtcgcgaagaagcgcggc
tatgtcaccatggacgagctcaacgcggtgctgccttcggaggaagtgacctccgaacag
atcgaagacacgatggcgatgctgtccgacatgggcatcaacgtggtcgaggacgacgag
cagggcgaagaagccgaggccgccgaaggcgatgccgaggaagatgccaacgagcttgcc
gaacagaccggcacggccgttgccgcgacgacgaccaagaaagagccgaccgaccgcacc
gacgaccccgtgcgaatgtatctgcgcgagatgggctcggtggagcttctgtcgcgcgag
ggcgagatcgcgatcgccaagcgcattgaggccggccgcgagacgatgatcgcgggcctg
tgcgaaagcccgctgaccttccaggccatcatcatctggcgcgacgaactcaacgaagcc
aagatcctgctgcgcgagatcatcgatctcgaagcgacctatgcaggccccgaggccaag
caggcgccgatcgtcgagcgtgtcgacgaggacgccaagccgaaggccgacgaaaagtcg
cgccgcggcggccgcgacgaggaagacgacgtcaccaacgtgggtggcgacacccgcggc
gaagaggatgaggaagaagacgacgaggcaagcctgtcgctggcggccatggaagcggaa
ctgcgtccgcaggtcatggaaaccctcgacgtcatcgccgacacctacaagaagctgcgc
aagctgcaggaccagcaggtcgaaaaccgtcttgctgccgccggcaccctgtcgccgagc
caggaccgtcgtctcaaggaactgaaggaccaactcgtcaaggcggtgaagtcgctgtcg
ctcaacaatgcgcgcatcgaggcgcttgtcgagcagctctacgacatcaacaagcggctg
gtgcagaacgagggcaagctgctgcgcctggccgaaagctacggtgtgcgccgcgaggaa
ttcctgcgcgaatatcagggttcggaactcgatccgaactggatccgctcgatctcgaac
ctgtccagccgtggctggaaggagttcaccaagaacgagaaggacgcgatccgcgacctg
cgcgccgaaatccagaacctcgccacagaaacagcgatctcgattctggaattccgcaag
atcgtcaaccaggtgcagaagggcgagcgcgaagcggcgatggccaagaaggagatggtg
gaagccaacctccgtctcgtcatctcgatcgccaagaagtacaccaaccgcggcctgcag
ttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtcgacaagttcgag
taccgccgtggctacaagttctcgacctatgcgacatggtggatcaggcaggcgatcacg
cgttcgatcgccgaccaggcccgcaccatccgcatcccggtgcacatgatcgagacgatc
aacaagatcgtgcggacctcgcgccagatgctgcacgagatcggccgcgagccgacgccg
gaagaactggctgaaaagctcgccatgccgctcgagaaggtgcgcaaggtgctgaagatc
gccaaggagccgatcagcctcgaaacgccggtcggcgacgaggaggattcgcacctcggc
gatttcatcgaagacaagatggcgatcctgccgatcgatgcggcaatccaggcgaacctg
cgcgagacgaccacgcgcgtgctcgcctcgctcaccccgcgcgaggagcgcgtgctgcgc
atgcgcttcggcatcggcatgaacaccgaccacacgctcgaagaggttggccagcagttc
tcggtcacccgcgaacgcatccgccagatcgaggccaaggcgctgcgcaagctcaagcat
ccgagccgcagccgtaagctgcgcagcttcctcgacagctga
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integrated database retrieval system
